Variant report

Variant	rs569801435
Chromosome Location	chr12:11045545-11045546
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758294	chr12:10969620-11714921	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
2	esv2759879	chr12:10969620-11714921	Genic enhancers Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
3	nsv898777	chr12:11045512-11129433	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:11009200-11045800	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr12:11012200-11051800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr12:11012200-11055800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr12:11012200-11056200	Weak transcription	Stomach Smooth Muscle	stomach
5	chr12:11014400-11052000	Weak transcription	Fetal Brain Male	brain
6	chr12:11026000-11045800	Weak transcription	Brain Germinal Matrix	brain
7	chr12:11028400-11053400	Weak transcription	Brain Substantia Nigra	brain
8	chr12:11029200-11053200	Weak transcription	Fetal Brain Female	brain
9	chr12:11030600-11045800	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr12:11030600-11046000	Weak transcription	Fetal Muscle Leg	muscle
11	chr12:11030600-11051200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr12:11030600-11053400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr12:11030600-11053400	Weak transcription	Esophagus	oesophagus
14	chr12:11030600-11054200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr12:11031000-11049400	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr12:11031000-11053200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr12:11031000-11055000	Weak transcription	Primary B cells from cord blood	blood
18	chr12:11032000-11053800	Weak transcription	Dnd41	blood
19	chr12:11033800-11101600	Weak transcription	Ovary	ovary
20	chr12:11034200-11046200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr12:11034600-11052000	Weak transcription	Primary hematopoietic stem cells	blood
22	chr12:11034600-11059000	Weak transcription	Fetal Heart	heart
23	chr12:11034800-11047400	Weak transcription	Adipose Nuclei	Adipose
24	chr12:11034800-11055200	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr12:11039200-11058000	Weak transcription	Aorta	Aorta
26	chr12:11039200-11070200	Weak transcription	Left Ventricle	heart
27	chr12:11039400-11048000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr12:11039400-11048200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr12:11043000-11046200	Enhancers	Fetal Intestine Large	intestine
30	chr12:11043400-11045800	Enhancers	Fetal Intestine Small	intestine
31	chr12:11043800-11047000	Enhancers	Liver	Liver
32	chr12:11043800-11055600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr12:11044200-11045800	Enhancers	Pancreatic Islets	Pancreatic Islet
34	chr12:11044600-11045600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr12:11044600-11046000	Enhancers	HepG2	liver
36	chr12:11044800-11051600	Weak transcription	Small Intestine	intestine
37	chr12:11045000-11047600	Weak transcription	Primary T cells from cord blood	blood
38	chr12:11045000-11054000	Weak transcription	A549	lung
39	chr12:11045000-11054600	Weak transcription	Primary B cells from peripheral blood	blood
40	chr12:11045200-11045600	Enhancers	Pancreas	Pancrea

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