Variant report

Variant	rs569822040
Chromosome Location	chr4:110837966-110837967
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:110831685..110835620-chr4:110836473..110840110,4	K562	blood:

Variant related genes	Relation type
ENSG00000138798	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530156	chr4:110721397-110911297	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	esv1806286	chr4:110837287-110845707	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv1811274	chr4:110837287-110845707	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv1814770	chr4:110837287-110845707	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110833600-110838000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:110834000-110838400	Active TSS	Skeletal Muscle Female	skeletal muscle
3	chr4:110834400-110844800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr4:110834600-110841800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:110835200-110842200	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr4:110836200-110841600	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr4:110836400-110840000	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr4:110836600-110839600	Weak transcription	Right Ventricle	heart
9	chr4:110836600-110842000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr4:110836800-110842400	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr4:110836800-110842600	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr4:110836800-110849400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr4:110837000-110840400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr4:110837000-110842000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr4:110837200-110838000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr4:110837200-110839400	Weak transcription	Pancreas	Pancrea
17	chr4:110837200-110842000	Weak transcription	HSMMtube	muscle
18	chr4:110837400-110839600	Weak transcription	Psoas Muscle	Psoas
19	chr4:110837400-110842000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr4:110837600-110838000	Enhancers	Fetal Intestine Small	intestine
21	chr4:110837600-110842600	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr4:110837800-110838200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr4:110837800-110841400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr4:110837800-110842200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr4:110837800-110846000	Weak transcription	Primary hematopoietic stem cells	blood

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