Variant report

Variant	rs569841372
Chromosome Location	chr6:146350588-146350589
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	REST	chr6:146350467-146351031	PFSK-1	brain:	n/a	n/a
2	REST	chr6:146348456-146350610	HL-60	blood:	n/a	chr6:146349530-146349548 chr6:146349534-146349543 chr6:146349529-146349549 chr6:146349529-146349549 chr6:146349535-146349549

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:146350585-146350635	PrEC	prostate:	n/a
2	chr6:146350585-146350635	AG04449	skin:	fetal
3	chr6:146350585-146350635	BJ	skin:	n/a
4	chr6:146350585-146350635	GM06990	blood:	n/a
5	chr6:146350585-146350635	AG04450	lung:	fetal
6	chr6:146350585-146350635	PFSK-1	brain:	n/a
7	chr6:146350585-146350635	PANC-1	pancreas:	n/a
8	chr6:146350585-146350635	CMK	blood:	n/a
9	chr6:146350585-146350635	HL-60	blood:	n/a
10	chr6:146350585-146350635	A549	lung:	n/a
11	chr6:146350585-146350635	H1-hESC	embryonic stem cell:	embryo
12	chr6:146350585-146350635	SK-N-SH	brain:	n/a
13	chr6:146350585-146350635	AG09309	skin:	n/a
14	chr6:146350585-146350635	HUVEC	blood vessel:	n/a
15	chr6:146350585-146350635	HepG2	liver:	n/a
16	chr6:146350585-146350635	HMEC	breast:	n/a
17	chr6:146350585-146350635	Jurkat	blood:	n/a
18	chr6:146350585-146350635	K562	blood:	n/a
19	chr6:146350585-146350635	RPTEC	kidney:	n/a
20	chr6:146350585-146350635	AG10803	skin:	n/a
21	chr6:146350585-146350635	GM12878	blood:	n/a
22	chr6:146350585-146350635	T-47D	breast:	n/a
23	chr6:146350585-146350635	U87	brain:	n/a
24	chr6:146350585-146350635	HIPEpiC	eye:	n/a
25	chr6:146350585-146350635	HCT-116	colon:	n/a
26	chr6:146350585-146350635	HEK293	kidney:	embryo
27	chr6:146350585-146350635	IMR90	lung:	fetal
28	chr6:146350585-146350635	NB4	blood:	n/a
29	chr6:146350585-146350635	Hela-S3	cervix:	n/a
30	chr6:146350585-146350635	SAEC	small airway:	n/a
31	chr6:146350585-146350635	HNPCEpiC	eye:	n/a
32	chr6:146350585-146350635	SK-N-SH_RA	brain:	n/a
33	chr6:146350585-146350635	HCF	heart:	n/a
34	chr6:146350585-146350635	SKMC	muscle:	n/a
35	chr6:146350585-146350635	Hepatocyte	liver:	n/a
36	chr6:146350585-146350635	LNCaP	prostate:	n/a
37	chr6:146350585-146350635	HEEpiC	esophagus:	n/a
38	chr6:146350585-146350635	HCM	heart:	n/a
39	chr6:146350585-146350635	HRE	kidney:	n/a
40	chr6:146350585-146350635	NH-A	brain:	n/a
41	chr6:146350585-146350635	GM19239	blood:	n/a
42	chr6:146350585-146350635	HCPEpiC	choroid plexus:	n/a
43	chr6:146350585-146350635	AG09319	gingival:	n/a
44	chr6:146350585-146350635	GM12891	blood:	n/a
45	chr6:146350585-146350635	NHDF-neo	bronchial:	n/a
46	chr6:146350585-146350635	MCF-7	breast:	n/a
47	chr6:146350585-146350635	HAEpiC	amniotic membrane:	n/a
48	chr6:146350585-146350635	Caco-2	colon:	n/a
49	chr6:146350585-146350635	ECC-1	luminal epithelium:	n/a
50	chr6:146350585-146350635	HRPEpiC	eye:	n/a

No data

Variant related genes	Relation type
GRM1	TF binding region
GRM1	CpG island

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604839	chr6:146305810-146828922	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1029440	chr6:146349442-146407453	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146348400-146351400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
2	chr6:146348600-146351200	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
3	chr6:146348600-146351200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
4	chr6:146348600-146351400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
5	chr6:146348600-146351400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
6	chr6:146348600-146351600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
7	chr6:146348600-146351600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
8	chr6:146348800-146350800	Active TSS	Pancreatic Islets	Pancreatic Islet
9	chr6:146348800-146351200	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
10	chr6:146348800-146351400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
11	chr6:146349000-146351800	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
12	chr6:146349200-146350600	ZNF genes & repeats	Spleen	Spleen
13	chr6:146349400-146350600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
14	chr6:146349600-146350600	ZNF genes & repeats	Right Atrium	heart
15	chr6:146349600-146350800	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
16	chr6:146349800-146350600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr6:146349800-146350600	Bivalent Enhancer	Brain Substantia Nigra	brain
18	chr6:146349800-146350600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
19	chr6:146349800-146350600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
20	chr6:146349800-146350800	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
21	chr6:146349800-146351400	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
22	chr6:146349800-146351400	Bivalent/Poised TSS	Brain Angular Gyrus	brain
23	chr6:146350000-146350600	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr6:146350000-146350600	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
25	chr6:146350000-146351000	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr6:146350000-146351000	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr6:146350000-146351800	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
28	chr6:146350200-146350600	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr6:146350200-146350600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr6:146350200-146350600	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
31	chr6:146350200-146350600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr6:146350200-146350600	Enhancers	Pancreas	Pancrea
33	chr6:146350200-146351200	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
34	chr6:146350200-146351200	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
35	chr6:146350200-146351400	Bivalent/Poised TSS	Fetal Brain Male	brain
36	chr6:146350400-146351200	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr6:146350400-146351200	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr6:146350400-146351800	Bivalent/Poised TSS	Brain Anterior Caudate	brain

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