Variant report

Variant	rs56987022
Chromosome Location	chr12:56054044-56054045
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000258921	TF binding region
ENSG00000270458	Chromatin interaction
ENSG00000135441	Chromatin interaction
ENSG00000258311	Chromatin interaction
ENSG00000135437	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs56818653	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv559001	chr12:55507465-56057708	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
2	nsv948625	chr12:55838718-56118833	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv983332	chr12:56053056-56058855	Flanking Active TSS Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:56049800-56054200	Enhancers	Fetal Intestine Small	intestine
2	chr12:56051400-56054400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr12:56052600-56054200	Enhancers	Rectal Smooth Muscle	rectum
4	chr12:56052800-56054200	Enhancers	Muscle Satellite Cultured Cells	--
5	chr12:56053600-56054200	Enhancers	K562	blood
6	chr12:56053600-56054400	Enhancers	Fetal Heart	heart
7	chr12:56053800-56057000	Weak transcription	Osteobl	bone
8	chr12:56053800-56058600	Weak transcription	HSMM	muscle
9	chr12:56054000-56056400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links