Variant report

Variant	rs569921107
Chromosome Location	chr9:7799870-7799871
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:70408470..70409240-chr9:7799247..7799915,2	NB4	blood:
2	chr9:7785236..7788053-chr9:7798343..7800585,2	K562	blood:
3	chr9:7764096..7766786-chr9:7797842..7799916,2	MCF-7	breast:
4	chr9:7785236..7787094-chr9:7798343..7800559,2	K562	blood:
5	chr17:56709050..56710030-chr9:7799215..7799951,2	NB4	blood:
6	chr15:59981502..59982267-chr9:7799535..7800195,2	NB4	blood:
7	chr15:25414756..25415321-chr9:7799310..7799908,2	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000273056	Chromatin interaction
ENSG00000270814	Chromatin interaction
ENSG00000140299	Chromatin interaction
ENSG00000212195	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033077	chr9:7358832-7990735	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv539977	chr9:7358832-7990735	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv613266	chr9:7588854-7901308	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv995116	chr9:7682729-8065192	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv892213	chr9:7770942-7856992	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv892214	chr9:7774180-7822486	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv892215	chr9:7799787-7889991	Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:7798200-7800400	Active TSS	K562	blood
2	chr9:7798400-7800000	Active TSS	Stomach Smooth Muscle	stomach
3	chr9:7798400-7800000	Active TSS	HSMMtube	muscle
4	chr9:7798400-7800200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr9:7798400-7800200	Active TSS	Psoas Muscle	Psoas
6	chr9:7798600-7800000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr9:7798600-7800000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr9:7798600-7800000	Active TSS	HUES64 Cell Line	embryonic stem cell
9	chr9:7798600-7800200	Active TSS	ES-I3 Cell Line	embryonic stem cell
10	chr9:7798600-7800200	Active TSS	H1 Cell Line	embryonic stem cell
11	chr9:7798600-7800200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr9:7798600-7800200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr9:7798600-7800200	Active TSS	Fetal Kidney	kidney
14	chr9:7798600-7800200	Active TSS	NHLF	lung
15	chr9:7798600-7800400	Active TSS	Thymus	Thymus
16	chr9:7798800-7800000	Active TSS	H9 Cell Line	embryonic stem cell
17	chr9:7798800-7800000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr9:7798800-7800000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr9:7798800-7800000	Active TSS	Colonic Mucosa	Colon
20	chr9:7798800-7800000	Active TSS	Lung	lung
21	chr9:7798800-7800000	Active TSS	Ovary	ovary
22	chr9:7798800-7800200	Active TSS	HUES6 Cell Line	embryonic stem cell
23	chr9:7798800-7800200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
24	chr9:7798800-7800200	Active TSS	Breast Myoepithelial Primary Cells	Breast
25	chr9:7798800-7800200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr9:7798800-7800200	Active TSS	Aorta	Aorta
27	chr9:7798800-7800200	Active TSS	Pancreatic Islets	Pancreatic Islet
28	chr9:7798800-7800200	Active TSS	Fetal Muscle Trunk	muscle
29	chr9:7798800-7800200	Active TSS	Right Atrium	heart
30	chr9:7798800-7800200	Active TSS	Right Ventricle	heart
31	chr9:7799000-7800000	Active TSS	Muscle Satellite Cultured Cells	--
32	chr9:7799000-7800000	Active TSS	Fetal Intestine Large	intestine
33	chr9:7799000-7800000	Active TSS	Pancreas	Pancrea
34	chr9:7799000-7800000	Active TSS	Small Intestine	intestine
35	chr9:7799000-7800000	Active TSS	Hela-S3	cervix
36	chr9:7799000-7800000	Active TSS	HepG2	liver
37	chr9:7799000-7800200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr9:7799000-7800200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr9:7799000-7800200	Active TSS	iPS-15b Cell Line	embryonic stem cell
40	chr9:7799000-7800200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr9:7799000-7800200	Active TSS	Fetal Intestine Small	intestine
42	chr9:7799000-7800200	Active TSS	Stomach Mucosa	stomach
43	chr9:7799000-7800200	Active TSS	HMEC	breast
44	chr9:7799000-7800400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr9:7799000-7800400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
46	chr9:7799000-7800400	Active TSS	Skeletal Muscle Male	skeletal muscle
47	chr9:7799000-7800400	Active TSS	A549	lung
48	chr9:7799000-7800400	Active TSS	GM12878-XiMat	blood
49	chr9:7799000-7800400	Active TSS	NHEK	skin
50	chr9:7799200-7800000	Active TSS	Primary neutrophils fromperipheralblood	blood

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