Variant report

Variant	rs569929258
Chromosome Location	chr12:123321268-123321269
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:123317720..123322313-chr12:123372173..123377754,7	MCF-7	breast:
2	chr12:123257747..123262116-chr12:123318149..123321331,4	MCF-7	breast:
3	chr12:123319192..123322007-chr12:123336993..123339222,2	MCF-7	breast:
4	chr12:123319135..123321319-chr3:160936978..160939441,2	MCF-7	breast:
5	chr12:123319262..123321924-chr12:123450152..123453465,3	K562	blood:
6	chr12:123321243..123322853-chr12:123379142..123381791,2	MCF-7	breast:
7	chr12:123318351..123322726-chr12:123344658..123350717,8	MCF-7	breast:
8	chr12:123213106..123215069-chr12:123321149..123322935,2	MCF-7	breast:
9	chr12:123320203..123322846-chr12:123716653..123718204,2	MCF-7	breast:
10	chr12:123320093..123322586-chr12:123715495..123717565,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000169251	Chromatin interaction
ENSG00000150967	Chromatin interaction
ENSG00000130787	Chromatin interaction
ENSG00000139722	Chromatin interaction
ENSG00000130783	Chromatin interaction
ENSG00000051825	Chromatin interaction
ENSG00000130921	Chromatin interaction
ENSG00000256152	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899571	chr12:123215734-123363562	Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	esv3388790	chr12:123275902-123655103	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv899572	chr12:123292503-123477311	Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
4	nsv899573	chr12:123312051-123528405	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
5	nsv517200	chr12:123312051-123654498	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
6	nsv899574	chr12:123316566-123360151	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
7	esv3373177	chr12:123318824-123321872	Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
8	esv3360797	chr12:123318974-123321472	Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
9	esv3321940	chr12:123319399-123321597	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:123318800-123321600	Active TSS	Brain Hippocampus Middle	brain
2	chr12:123318800-123321600	Active TSS	Ovary	ovary
3	chr12:123318800-123321600	Active TSS	Stomach Smooth Muscle	stomach
4	chr12:123318800-123322400	Active TSS	Brain Angular Gyrus	brain
5	chr12:123318800-123322400	Active TSS	Pancreatic Islets	Pancreatic Islet
6	chr12:123319000-123321400	Active TSS	Brain Anterior Caudate	brain
7	chr12:123319000-123321600	Active TSS	Breast Myoepithelial Primary Cells	Breast
8	chr12:123319000-123321600	Active TSS	Left Ventricle	heart
9	chr12:123319000-123321600	Active TSS	Right Ventricle	heart
10	chr12:123319000-123321800	Active TSS	Right Atrium	heart
11	chr12:123319000-123322000	Active TSS	Brain Inferior Temporal Lobe	brain
12	chr12:123319200-123321400	Active TSS	Gastric	stomach
13	chr12:123319200-123321600	Active TSS	Esophagus	oesophagus
14	chr12:123319200-123321600	Active TSS	Sigmoid Colon	Sigmoid Colon
15	chr12:123319200-123321800	Active TSS	Aorta	Aorta
16	chr12:123319200-123321800	Active TSS	Brain Substantia Nigra	brain
17	chr12:123319600-123321400	Active TSS	Primary T helper naive cells from peripheral blood	blood
18	chr12:123319600-123321400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr12:123319600-123321400	Active TSS	Lung	lung
20	chr12:123319600-123321400	Active TSS	Skeletal Muscle Male	skeletal muscle
21	chr12:123319600-123321600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr12:123319600-123321600	Active TSS	Primary T killer naive cells fromperipheralblood	blood
23	chr12:123319600-123321600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
24	chr12:123319600-123321600	Active TSS	Colonic Mucosa	Colon
25	chr12:123319600-123321600	Active TSS	Duodenum Smooth Muscle	Duodenum
26	chr12:123319600-123321600	Active TSS	Small Intestine	intestine
27	chr12:123319600-123321600	Active TSS	HSMMtube	muscle
28	chr12:123319600-123321800	Active TSS	Pancreas	Pancrea
29	chr12:123319800-123321400	Active TSS	Primary B cells from cord blood	blood
30	chr12:123319800-123321400	Active TSS	Primary B cells from peripheral blood	blood
31	chr12:123319800-123321400	Active TSS	Primary T helper cells PMA-I stimulated	--
32	chr12:123319800-123321400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr12:123319800-123321400	Active TSS	Duodenum Mucosa	Duodenum
34	chr12:123319800-123321400	Active TSS	Fetal Intestine Small	intestine
35	chr12:123319800-123321600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr12:123319800-123321600	Active TSS	Fetal Intestine Large	intestine
37	chr12:123319800-123321600	Active TSS	Psoas Muscle	Psoas
38	chr12:123320600-123321400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
39	chr12:123320600-123321400	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr12:123320600-123321400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
41	chr12:123320600-123321400	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
42	chr12:123320600-123321400	Transcr. at gene 5' and 3'	Primary T helper naive cells fromperipheralblood	blood
43	chr12:123320600-123321400	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
44	chr12:123320600-123321400	Active TSS	Stomach Mucosa	stomach
45	chr12:123320600-123321400	Bivalent/Poised TSS	HepG2	liver
46	chr12:123320600-123321600	Flanking Bivalent TSS/Enh	Primary monocytes fromperipheralblood	blood
47	chr12:123320600-123321600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
48	chr12:123320600-123321600	Active TSS	Primary T killer memory cells from peripheral blood	blood
49	chr12:123320600-123321600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr12:123320600-123321600	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood

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