Variant report

Variant	rs569952651
Chromosome Location	chr6:161089236-161089237
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr6:161088969-161089254	K562	blood:	n/a	n/a
2	RAD21	chr6:161088931-161089315	SK-N-SH_RA	brain:	n/a	chr6:161089113-161089132
3	RAD21	chr6:161088895-161089337	H1-hESC	embryonic stem cell:	n/a	chr6:161089113-161089132 chr6:161088903-161088916
4	RAD21	chr6:161088808-161089413	H1-hESC	embryonic stem cell:	n/a	chr6:161089113-161089132 chr6:161088903-161088916
5	SMC3	chr6:161088913-161089354	Hela-S3	cervix:	n/a	chr6:161089117-161089131
6	RAD21	chr6:161088939-161089289	K562	blood:	n/a	chr6:161089113-161089132
7	CTCF	chr6:161089100-161089250	HA-sp	spinal cord:	n/a	chr6:161089110-161089131 chr6:161089115-161089133
8	CTCF	chr6:161088936-161089274	HepG2	liver:	n/a	chr6:161089110-161089131 chr6:161089115-161089133
9	RAD21	chr6:161088781-161089421	HCT-116	colon:	n/a	chr6:161089113-161089132 chr6:161088903-161088916
10	SMC3	chr6:161088879-161089307	HepG2	liver:	n/a	chr6:161089117-161089131
11	CTCF	chr6:161088974-161089263	NHEK	skin:	n/a	chr6:161089110-161089131 chr6:161089115-161089133
12	RAD21	chr6:161088894-161089370	MCF-7	breast:	n/a	chr6:161089113-161089132 chr6:161088903-161088916
13	CTCF	chr6:161088899-161089292	K562	blood:	n/a	chr6:161089110-161089131 chr6:161089115-161089133
14	CTCF	chr6:161089005-161089274	MCF-7	breast:	n/a	chr6:161089110-161089131 chr6:161089115-161089133
15	RAD21	chr6:161088884-161089435	MCF-7	breast:	n/a	chr6:161089113-161089132 chr6:161088903-161088916
16	RAD21	chr6:161088924-161089268	GM12878	blood:	n/a	chr6:161089113-161089132
17	CTCF	chr6:161088963-161089276	GM19240	blood:	n/a	chr6:161089110-161089131 chr6:161089115-161089133
18	RAD21	chr6:161088907-161089295	Hela-S3	cervix:	n/a	chr6:161089113-161089132
19	CTCF	chr6:161089160-161089310	HFF-Myc	foreskin:	n/a	n/a
20	RAD21	chr6:161088768-161089409	HCT-116	colon:	n/a	chr6:161089113-161089132 chr6:161088903-161088916
21	CTCF	chr6:161088985-161089255	K562	blood:	n/a	chr6:161089110-161089131 chr6:161089115-161089133
22	ZNF143	chr6:161088948-161089279	GM12878	blood:	n/a	n/a
23	CTCF	chr6:161089005-161089266	MCF-7	breast:	n/a	chr6:161089110-161089131 chr6:161089115-161089133
24	CTCF	chr6:161088875-161089391	K562	blood:	n/a	chr6:161089110-161089131 chr6:161089115-161089133
25	ZNF263	chr6:161088736-161089303	HEK293-T-REx	kidney:	n/a	n/a
26	CTCF	chr6:161088975-161089281	GM19239	blood:	n/a	chr6:161089110-161089131 chr6:161089115-161089133
27	CTCF	chr6:161088809-161089479	A549	lung:	n/a	chr6:161089110-161089131 chr6:161089115-161089133
28	CTCF	chr6:161088929-161089334	H1-hESC	embryonic stem cell:	n/a	chr6:161089110-161089131 chr6:161089115-161089133
29	SIN3A	chr6:161088947-161089292	H1-hESC	embryonic stem cell:	n/a	n/a
30	CTCF	chr6:161088896-161089321	H1-hESC	embryonic stem cell:	n/a	chr6:161089110-161089131 chr6:161089115-161089133
31	CTCF	chr6:161089003-161089261	HepG2	liver:	n/a	chr6:161089110-161089131 chr6:161089115-161089133
32	MYBL2	chr6:161088770-161089487	HepG2	liver:	n/a	n/a
33	CTCF	chr6:161089020-161089266	GM10266	blood:	n/a	chr6:161089110-161089131 chr6:161089115-161089133
34	CTCF	chr6:161089120-161089270	A549	lung:	n/a	n/a
35	YY1	chr6:161088949-161089289	GM12878	blood:	n/a	n/a
36	CTCF	chr6:161088976-161089294	GM19238	blood:	n/a	chr6:161089110-161089131 chr6:161089115-161089133
37	ZNF143	chr6:161088937-161089288	H1-hESC	embryonic stem cell:	n/a	n/a
38	CTCF	chr6:161089000-161089277	GM13977	blood:	n/a	chr6:161089110-161089131 chr6:161089115-161089133
39	CTCF	chr6:161089100-161089250	HFF-Myc	foreskin:	n/a	chr6:161089110-161089131 chr6:161089115-161089133
40	CTCF	chr6:161088976-161089268	A549	lung:	n/a	chr6:161089110-161089131 chr6:161089115-161089133
41	CTCF	chr6:161089060-161089239	Fibrobl	skin:	n/a	chr6:161089110-161089131 chr6:161089115-161089133
42	RAD21	chr6:161088851-161089288	HepG2	liver:	n/a	chr6:161089113-161089132 chr6:161088903-161088916
43	SMC3	chr6:161088943-161089267	GM12878	blood:	n/a	chr6:161089117-161089131
44	CTCF	chr6:161088996-161089259	MCF-7	breast:	n/a	chr6:161089110-161089131 chr6:161089115-161089133
45	CTCF	chr6:161088971-161089287	Gliobla	brain:	n/a	chr6:161089110-161089131 chr6:161089115-161089133
46	RUNX3	chr6:161088850-161089287	GM12878	blood:	n/a	n/a
47	CTCF	chr6:161088951-161089267	LNCaP	prostate:	n/a	chr6:161089110-161089131 chr6:161089115-161089133
48	RAD21	chr6:161088908-161089300	HepG2	liver:	n/a	chr6:161089113-161089132
49	MAZ	chr6:161088962-161089254	K562	blood:	n/a	n/a
50	RAD21	chr6:161088912-161089290	GM12878	blood:	n/a	chr6:161089113-161089132

No.	Distal block	Cell Line	Cell type
1	chr6:160954972..160955719-chr6:161088699..161089595,2	MCF-7	breast:
2	chr6:160940535..160941592-chr6:161088101..161089900,7	K562	blood:
3	chr6:160876729..160877411-chr6:161088842..161089583,2	K562	blood:
4	chr6:160939583..160942817-chr6:161087432..161090286,3	K562	blood:
5	chr6:161080728..161083245-chr6:161087740..161089889,2	MCF-7	breast:
6	chr6:160941041..160942817-chr6:161087432..161089515,2	K562	blood:

Variant related genes	Relation type
LPA	TF binding region

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758089	chr6:160372244-161234665	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	esv2759484	chr6:160372244-161234665	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv1030171	chr6:160648469-161091864	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv605005	chr6:161069941-161152449	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv3372556	chr6:161087762-161092360	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv3385632	chr6:161088262-161091460	Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3433335	chr6:161088362-161091560	Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161084200-161089800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:161087400-161089600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr6:161087600-161100200	Weak transcription	Right Atrium	heart
4	chr6:161088600-161089400	Enhancers	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links