Variant report

Variant	rs569953049
Chromosome Location	chr6:33891485-33891486
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:33881007..33883115-chr6:33890110..33892674,2	MCF-7	breast:
2	chr6:33887758..33891673-chr6:33891780..33895604,5	K562	blood:
3	chr6:33890903..33893411-chr6:33904076..33906137,2	MCF-7	breast:
4	chr6:33881960..33884632-chr6:33890254..33892138,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916210	chr6:33804111-34144062	Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
2	nsv462899	chr6:33880480-33944014	Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv602841	chr6:33880480-33944014	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv3409018	chr6:33890574-33894172	Enhancers Bivalent Enhancer Weak transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33885200-33891600	Weak transcription	Pancreas	Pancrea
2	chr6:33886600-33894600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:33889600-33892400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr6:33889800-33891600	Weak transcription	Spleen	Spleen
5	chr6:33889800-33892400	Enhancers	Primary T cells fromperipheralblood	blood
6	chr6:33889800-33893200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr6:33890600-33892200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr6:33890600-33892600	Enhancers	Primary hematopoietic stem cells	blood
9	chr6:33890600-33893400	Enhancers	Fetal Thymus	thymus
10	chr6:33890800-33891600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr6:33890800-33892000	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr6:33891400-33891600	Bivalent Enhancer	Fetal Stomach	stomach
13	chr6:33891400-33891800	Enhancers	Fetal Lung	lung
14	chr6:33891400-33892000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
15	chr6:33891400-33892200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr6:33891400-33892200	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr6:33891400-33892200	Enhancers	Primary T helper cells fromperipheralblood	blood
18	chr6:33891400-33892200	Enhancers	Primary T killer memory cells from peripheral blood	blood
19	chr6:33891400-33892200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr6:33891400-33892400	Enhancers	Primary T helper naive cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links