Variant report

Variant	rs569963933
Chromosome Location	chr3:43030995-43030996
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460522	chr3:42967597-43175207	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv590149	chr3:42967597-43175207	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv460523	chr3:43025986-43063406	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv590150	chr3:43025986-43063406	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv236200	chr3:43029502-43031844	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
6	esv3390521	chr3:43030448-43032446	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv513044	chr3:43030479-43032100	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
8	esv3322138	chr3:43030816-43031489	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
9	esv7584	chr3:43030843-43031696	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
10	esv2200110	chr3:43030900-43031616	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
11	esv2496441	chr3:43030917-43032274	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
12	esv3354754	chr3:43030990-43031520	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43022000-43033000	Weak transcription	Pancreas	Pancrea
2	chr3:43022000-43037000	Weak transcription	Right Atrium	heart
3	chr3:43022200-43032800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr3:43023000-43037800	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr3:43026600-43032000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr3:43026600-43032400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr3:43026600-43032800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr3:43026800-43032400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr3:43027000-43033200	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr3:43027200-43032800	Weak transcription	Stomach Smooth Muscle	stomach
11	chr3:43027400-43032200	Weak transcription	Fetal Thymus	thymus
12	chr3:43029600-43031600	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr3:43029800-43033200	Weak transcription	Esophagus	oesophagus
14	chr3:43030000-43032400	Weak transcription	Fetal Muscle Leg	muscle
15	chr3:43030200-43032000	Weak transcription	Brain Hippocampus Middle	brain
16	chr3:43030400-43031000	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr3:43030400-43032200	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr3:43030400-43032200	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr3:43030400-43032400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr3:43030400-43032400	Weak transcription	Brain Angular Gyrus	brain
21	chr3:43030400-43032600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr3:43030400-43033000	Weak transcription	Ovary	ovary
23	chr3:43030400-43033600	Weak transcription	Adipose Nuclei	Adipose
24	chr3:43030600-43033000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr3:43030600-43033000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr3:43030800-43031200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr3:43030800-43032200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr3:43030800-43032200	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr3:43030800-43032200	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr3:43030800-43032200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr3:43030800-43032400	Weak transcription	Brain Cingulate Gyrus	brain
32	chr3:43030800-43032800	Weak transcription	Brain Substantia Nigra	brain
33	chr3:43030800-43037800	Weak transcription	Liver	Liver

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