Variant report

Variant	rs569971272
Chromosome Location	chr13:95359814-95359815
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:19)
CpG islands
(count:0)
Chromatin interactive
region (count:2)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:19 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	E2F6	chr13:95359597-95360128	H1-hESC	embryonic stem cell:	n/a	n/a
2	CTBP2	chr13:95359526-95360034	H1-hESC	embryonic stem cell:	n/a	n/a
3	HMGN3	chr13:95359663-95359837	K562	blood:	n/a	n/a
4	POLR2A	chr13:95359788-95360944	H1-neurons	neurons:	n/a	n/a
5	E2F6	chr13:95359174-95360317	H1-hESC	embryonic stem cell:	n/a	n/a
6	SIN3A	chr13:95359172-95360248	H1-hESC	embryonic stem cell:	n/a	n/a
7	POLR2A	chr13:95358768-95360299	H1-neurons	neurons:	n/a	n/a
8	MAX	chr13:95359483-95360016	A549	lung:	n/a	n/a
9	POLR2A	chr13:95359594-95359886	H1-hESC	embryonic stem cell:	n/a	n/a
10	FOXA2	chr13:95359782-95360166	A549	lung:	n/a	n/a
11	MAX	chr13:95359395-95360250	H1-hESC	embryonic stem cell:	n/a	n/a
12	RCOR1	chr13:95359683-95359995	K562	blood:	n/a	n/a
13	TBP	chr13:95359625-95359967	H1-hESC	embryonic stem cell:	n/a	n/a
14	POLR2A	chr13:95359545-95360165	H1-hESC	embryonic stem cell:	n/a	n/a
15	MAX	chr13:95359642-95360182	H1-hESC	embryonic stem cell:	n/a	n/a
16	KAP1	chr13:95359115-95361120	HEK293	kidney:	n/a	n/a
17	MAX	chr13:95359503-95360243	H1-hESC	embryonic stem cell:	n/a	n/a
18	BACH1	chr13:95359027-95360743	H1-hESC	embryonic stem cell:	n/a	n/a
19	GATA2	chr13:95359695-95360731	SH-SY5Y	brain:	n/a	n/a

No data

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:95354749..95357417-chr13:95358781..95361227,3	MCF-7	breast:
2	chr13:95357906..95359959-chr13:95361552..95364059,2	MCF-7	breast:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SOX21-1	chr13:95359725-95360750	ENSG00000248922
2	lnc-SOX21-1	chr13:95359725-95360733	NONHSAT034735

No data

Variant related genes	Relation type
LINC00391	TF binding region
ENSG00000238230	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34004	chr13:94906537-95392644	Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv832686	chr13:95206742-95400992	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv1813549	chr13:95333331-95377127	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv1824604	chr13:95357807-95365771	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv826750	chr13:95358502-95368070	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95357600-95360800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr13:95358400-95361600	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
3	chr13:95358400-95361600	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
4	chr13:95358600-95362400	Active TSS	H1 Cell Line	embryonic stem cell
5	chr13:95358800-95360800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
6	chr13:95358800-95361000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr13:95358800-95361000	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
8	chr13:95358800-95361200	Active TSS	iPS-15b Cell Line	embryonic stem cell
9	chr13:95358800-95361600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
10	chr13:95358800-95366200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr13:95359000-95360000	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
12	chr13:95359000-95360800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
13	chr13:95359000-95360800	Active TSS	Brain Substantia Nigra	brain
14	chr13:95359000-95360800	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
15	chr13:95359000-95360800	Bivalent Enhancer	Fetal Muscle Leg	muscle
16	chr13:95359000-95362200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
17	chr13:95359000-95368000	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr13:95359200-95360200	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
19	chr13:95359200-95360400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
20	chr13:95359200-95360600	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
21	chr13:95359200-95360800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr13:95359200-95360800	Bivalent/Poised TSS	Brain Angular Gyrus	brain
23	chr13:95359200-95360800	Bivalent/Poised TSS	NH-A	brain
24	chr13:95359200-95361000	Active TSS	Brain Anterior Caudate	brain
25	chr13:95359200-95366600	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr13:95359400-95360200	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
27	chr13:95359400-95360200	Bivalent Enhancer	Fetal Heart	heart
28	chr13:95359400-95360400	Bivalent/Poised TSS	A549	lung
29	chr13:95359400-95360600	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
30	chr13:95359400-95360800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr13:95359400-95360800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
32	chr13:95359400-95360800	Bivalent Enhancer	Fetal Stomach	stomach
33	chr13:95359400-95361000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
34	chr13:95359400-95361000	Active TSS	H9 Cell Line	embryonic stem cell
35	chr13:95359600-95360000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
36	chr13:95359600-95360000	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
37	chr13:95359600-95360000	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
38	chr13:95359600-95360000	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
39	chr13:95359600-95360000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr13:95359600-95360000	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr13:95359600-95360000	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
42	chr13:95359600-95360000	Flanking Active TSS	Esophagus	oesophagus
43	chr13:95359600-95360000	Bivalent Enhancer	Left Ventricle	heart
44	chr13:95359600-95360000	Bivalent Enhancer	Lung	lung
45	chr13:95359600-95360000	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
46	chr13:95359600-95360200	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr13:95359600-95360200	Bivalent Enhancer	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr13:95359600-95360200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr13:95359600-95360200	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
50	chr13:95359600-95360200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin

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