Variant report

Variant	rs569978267
Chromosome Location	chrX:138282321-138282322
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525867	chrX:137580983-138439843	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv533984	chrX:137938683-138556308	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv532935	chrX:138281469-138764448	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:138277400-138285200	Weak transcription	Pancreas	Pancrea
2	chrX:138277600-138282400	Weak transcription	Stomach Mucosa	stomach
3	chrX:138277600-138284000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chrX:138277600-138285400	Weak transcription	Liver	Liver
5	chrX:138277600-138286000	Weak transcription	Right Atrium	heart
6	chrX:138278000-138282400	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chrX:138279000-138284800	Weak transcription	Gastric	stomach
8	chrX:138279400-138282400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chrX:138281600-138282800	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chrX:138281600-138283000	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chrX:138281800-138282600	Enhancers	Psoas Muscle	Psoas
12	chrX:138282000-138283000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chrX:138282000-138283400	Enhancers	K562	blood
14	chrX:138282000-138284200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chrX:138282200-138283000	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
16	chrX:138282200-138283600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chrX:138282200-138283600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links