Variant report

Variant	rs56997929
Chromosome Location	chr5:115173680-115173681
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs58119889	0.88[AFR][1000 genomes]
rs61348187	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868915	chr5:114723371-115252527	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv949677	chr5:115104829-115496168	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115155000-115174400	Weak transcription	Fetal Heart	heart
2	chr5:115161800-115176200	Weak transcription	Gastric	stomach
3	chr5:115162000-115174400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr5:115162000-115176200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr5:115162000-115176600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr5:115162600-115175600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr5:115163000-115176400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr5:115163200-115174000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr5:115163400-115173800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr5:115163400-115173800	Strong transcription	Duodenum Mucosa	Duodenum
11	chr5:115163400-115173800	Strong transcription	NHDF-Ad	bronchial
12	chr5:115163400-115174200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr5:115163800-115174000	Strong transcription	Fetal Thymus	thymus
14	chr5:115163800-115174400	Strong transcription	HUES64 Cell Line	embryonic stem cell
15	chr5:115163800-115174600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr5:115164000-115173800	Strong transcription	Dnd41	blood
17	chr5:115164000-115174000	Strong transcription	Primary monocytes fromperipheralblood	blood
18	chr5:115164000-115174000	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr5:115164000-115174200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr5:115164200-115174400	Weak transcription	Pancreas	Pancrea
21	chr5:115164600-115173800	Strong transcription	Placenta	Placenta
22	chr5:115164600-115174000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
23	chr5:115166000-115174200	Strong transcription	Primary B cells from cord blood	blood
24	chr5:115166600-115175200	Weak transcription	Fetal Intestine Small	intestine
25	chr5:115166600-115175600	Weak transcription	Small Intestine	intestine
26	chr5:115166800-115175000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr5:115168400-115174400	Weak transcription	Spleen	Spleen
28	chr5:115168400-115176400	Weak transcription	Aorta	Aorta
29	chr5:115168600-115173800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr5:115168800-115174000	Strong transcription	HUES48 Cell Line	embryonic stem cell
31	chr5:115169000-115173800	Strong transcription	HUES6 Cell Line	embryonic stem cell
32	chr5:115169000-115173800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr5:115169000-115173800	Strong transcription	NH-A	brain
34	chr5:115169000-115174000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr5:115169000-115174000	Strong transcription	A549	lung
36	chr5:115169000-115174200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
37	chr5:115169000-115174200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr5:115169200-115173800	Strong transcription	Primary T cells fromperipheralblood	blood
39	chr5:115169200-115173800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr5:115169200-115173800	Strong transcription	GM12878-XiMat	blood
41	chr5:115169200-115174600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr5:115169400-115173800	Strong transcription	Primary hematopoietic stem cells	blood
43	chr5:115169400-115174000	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr5:115169600-115174000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
45	chr5:115169600-115174400	Strong transcription	K562	blood
46	chr5:115170000-115174400	Weak transcription	Brain Angular Gyrus	brain
47	chr5:115170400-115175600	Weak transcription	Right Ventricle	heart
48	chr5:115170600-115173800	Strong transcription	HepG2	liver
49	chr5:115170600-115174400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr5:115170600-115174400	Weak transcription	Brain Germinal Matrix	brain

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