Variant report

Variant	rs56998303
Chromosome Location	chr3:54181555-54181556
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs13059372	0.80[AFR][1000 genomes]
rs6789853	1.00[AMR][1000 genomes]
rs72972027	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72972028	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72972030	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72972043	1.00[AMR][1000 genomes]
rs72972046	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1006990	chr3:53849510-54285212	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv1014595	chr3:53944473-54846754	Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1014157	chr3:54168755-54332321	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:54177200-54183000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr3:54180200-54181600	Enhancers	Skeletal Muscle Male	skeletal muscle
3	chr3:54180200-54183800	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr3:54180400-54181800	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr3:54180600-54181600	Enhancers	Colon Smooth Muscle	Colon
6	chr3:54180800-54181600	Enhancers	Stomach Smooth Muscle	stomach
7	chr3:54181000-54195000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr3:54181400-54181600	Weak transcription	Fetal Brain Male	brain
9	chr3:54181400-54181800	Enhancers	Hela-S3	cervix
10	chr3:54181400-54183200	Weak transcription	Right Atrium	heart
11	chr3:54181400-54183200	Weak transcription	Spleen	Spleen

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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