Variant report

Variant	rs569992155
Chromosome Location	chr17:66511878-66511879
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:66451996..66456192-chr17:66506725..66511948,5	MCF-7	breast:
2	chr17:66507070..66510931-chr17:66511371..66513422,6	K562	blood:
3	chr17:66509822..66512031-chr17:66520719..66523833,3	K562	blood:

Variant related genes	Relation type
ENSG00000108946	Chromatin interaction
ENSG00000070540	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932935	chr17:66511434-66518806	Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv933839	chr17:66511434-66518903	Genic enhancers Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66507400-66513600	Active TSS	Right Ventricle	heart
2	chr17:66509600-66513000	Weak transcription	Spleen	Spleen
3	chr17:66509600-66513400	Weak transcription	Gastric	stomach
4	chr17:66509600-66513600	Weak transcription	Esophagus	oesophagus
5	chr17:66509600-66525800	Weak transcription	Pancreas	Pancrea
6	chr17:66509800-66514200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr17:66510000-66513400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr17:66510200-66512800	Weak transcription	Colonic Mucosa	Colon
9	chr17:66510200-66513400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr17:66511200-66512000	Strong transcription	HUES48 Cell Line	embryonic stem cell
11	chr17:66511200-66512000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr17:66511200-66512000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr17:66511200-66512000	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
14	chr17:66511200-66512200	Genic enhancers	Fetal Lung	lung
15	chr17:66511200-66512800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr17:66511200-66513200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
17	chr17:66511200-66513400	Weak transcription	Fetal Intestine Small	intestine
18	chr17:66511200-66514000	Strong transcription	K562	blood
19	chr17:66511200-66514200	Strong transcription	Placenta	Placenta
20	chr17:66511200-66515400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
21	chr17:66511200-66516800	Strong transcription	Fetal Thymus	thymus
22	chr17:66511400-66512200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr17:66511400-66512200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr17:66511400-66512400	Strong transcription	HUES64 Cell Line	embryonic stem cell
25	chr17:66511400-66512400	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
26	chr17:66511400-66512600	Transcr. at gene 5' and 3'	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr17:66511400-66512800	Weak transcription	Primary T cells from cord blood	blood
28	chr17:66511400-66512800	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr17:66511400-66513000	Strong transcription	H1 Cell Line	embryonic stem cell
30	chr17:66511400-66513000	Weak transcription	Brain Germinal Matrix	brain
31	chr17:66511400-66513400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr17:66511400-66513800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr17:66511400-66514200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
34	chr17:66511400-66514200	Strong transcription	Primary T cells fromperipheralblood	blood
35	chr17:66511400-66514200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
36	chr17:66511400-66514600	Strong transcription	Primary monocytes fromperipheralblood	blood
37	chr17:66511400-66514800	Strong transcription	Dnd41	blood
38	chr17:66511400-66515000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
39	chr17:66511400-66516200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr17:66511400-66516400	Strong transcription	Primary hematopoietic stem cells	blood
41	chr17:66511400-66516600	Strong transcription	Rectal Mucosa Donor 29	rectum
42	chr17:66511600-66512000	Transcr. at gene 5' and 3'	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr17:66511600-66512400	Transcr. at gene 5' and 3'	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr17:66511600-66512400	Enhancers	Colon Smooth Muscle	Colon
45	chr17:66511600-66512400	Enhancers	Fetal Heart	heart
46	chr17:66511600-66512600	Transcr. at gene 5' and 3'	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr17:66511600-66512600	Weak transcription	Fetal Kidney	kidney
48	chr17:66511600-66513000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr17:66511600-66513000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr17:66511600-66513000	Strong transcription	Duodenum Mucosa	Duodenum

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