Variant report

Variant	rs570017894
Chromosome Location	chr9:100565500-100565501
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:19)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:19 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:100553353..100555259-chr9:100563805..100566099,2	MCF-7	breast:
2	chr9:100548531..100552481-chr9:100563456..100568278,5	MCF-7	breast:
3	chr9:100476522..100478134-chr9:100564104..100567075,2	K562	blood:
4	chr9:100512323..100515740-chr9:100564209..100566797,3	MCF-7	breast:
5	chr9:100564515..100567893-chr9:100582298..100586043,4	MCF-7	breast:
6	chr9:100475511..100477601-chr9:100564696..100566585,2	MCF-7	breast:
7	chr9:100563307..100565719-chr9:100637927..100639761,2	MCF-7	breast:
8	chr9:100459437..100460978-chr9:100564253..100567153,2	MCF-7	breast:
9	chr9:100529991..100532148-chr9:100565472..100567018,2	MCF-7	breast:
10	chr9:100564653..100566518-chr9:100684080..100685745,2	MCF-7	breast:
11	chr9:100458131..100460553-chr9:100565318..100568511,3	MCF-7	breast:
12	chr9:100563780..100567057-chr9:100567518..100571604,5	K562	blood:
13	chr9:100552530..100555931-chr9:100564529..100567478,4	MCF-7	breast:
14	chr9:100513670..100516311-chr9:100564353..100566639,2	MCF-7	breast:
15	chr9:100554548..100556710-chr9:100564106..100565794,2	K562	blood:
16	chr9:100564087..100566855-chr9:100614362..100616413,2	MCF-7	breast:
17	chr9:100470983..100474278-chr9:100563427..100567562,3	MCF-7	breast:
18	chr9:100560448..100563206-chr9:100564370..100567117,3	MCF-7	breast:
19	chr9:100556229..100558393-chr9:100563519..100565810,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000136936	Chromatin interaction
ENSG00000136932	Chromatin interaction
ENSG00000178919	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043753	chr9:100458109-100599265	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv893611	chr9:100561055-100739888	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	esv3338700	chr9:100564756-100567504	Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100563600-100565600	Enhancers	HMEC	breast
2	chr9:100564000-100565800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr9:100564400-100565600	Weak transcription	Esophagus	oesophagus
4	chr9:100564600-100565800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr9:100564800-100565800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr9:100564800-100566400	Active TSS	A549	lung
7	chr9:100565200-100565600	Active TSS	Brain Germinal Matrix	brain
8	chr9:100565200-100565600	Enhancers	Osteobl	bone
9	chr9:100565200-100565800	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr9:100565200-100566200	Active TSS	Breast Myoepithelial Primary Cells	Breast
11	chr9:100565400-100565600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr9:100565400-100565600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr9:100565400-100565600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
14	chr9:100565400-100565600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
15	chr9:100565400-100565600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
16	chr9:100565400-100565600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr9:100565400-100565600	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
18	chr9:100565400-100565600	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr9:100565400-100565600	Flanking Active TSS	Brain Anterior Caudate	brain
20	chr9:100565400-100565600	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
21	chr9:100565400-100565600	Flanking Active TSS	Fetal Brain Female	brain
22	chr9:100565400-100565600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
23	chr9:100565400-100565600	Active TSS	Right Atrium	heart
24	chr9:100565400-100565600	Active TSS	Hela-S3	cervix
25	chr9:100565400-100565600	Active TSS	NH-A	brain
26	chr9:100565400-100565800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
27	chr9:100565400-100565800	Active TSS	Primary B cells from cord blood	blood
28	chr9:100565400-100565800	Flanking Active TSS	Primary B cells from peripheral blood	blood
29	chr9:100565400-100565800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
30	chr9:100565400-100565800	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr9:100565400-100565800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr9:100565400-100565800	Flanking Bivalent TSS/Enh	Fetal Brain Male	brain
33	chr9:100565400-100565800	Bivalent Enhancer	Fetal Heart	heart
34	chr9:100565400-100565800	Bivalent/Poised TSS	Fetal Lung	lung
35	chr9:100565400-100565800	Flanking Bivalent TSS/Enh	HUVEC	blood vessel
36	chr9:100565400-100565800	Flanking Active TSS	NHEK	skin
37	chr9:100565400-100566000	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr9:100565400-100566000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr9:100565400-100566000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr9:100565400-100566000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr9:100565400-100566000	Active TSS	Primary T helper cells fromperipheralblood	blood
42	chr9:100565400-100566000	Active TSS	Primary T regulatory cells fromperipheralblood	blood
43	chr9:100565400-100566000	Bivalent/Poised TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr9:100565400-100566000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr9:100565400-100566000	Active TSS	Brain Hippocampus Middle	brain
46	chr9:100565400-100566000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
47	chr9:100565400-100566000	Active TSS	Duodenum Mucosa	Duodenum
48	chr9:100565400-100566000	Active TSS	Pancreas	Pancrea
49	chr9:100565400-100566000	Active TSS	Stomach Smooth Muscle	stomach
50	chr9:100565400-100566000	Active TSS	HSMM	muscle

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