Variant report

Variant	rs570044774
Chromosome Location	chr11:73582029-73582030
allele	-/TCACTGCAACCT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:73567413..73569720-chr11:73578293..73583542,5	MCF-7	breast:
2	chr11:73576169..73580357-chr11:73581447..73584221,5	MCF-7	breast:
3	chr11:73569512..73571560-chr11:73581546..73584245,2	K562	blood:
4	chr11:73581885..73584669-chr11:73588104..73591786,3	MCF-7	breast:
5	chr11:73572749..73574418-chr11:73579241..73582235,3	MCF-7	breast:
6	chr11:73470293..73472350-chr11:73581492..73584395,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000256034	Chromatin interaction
ENSG00000175582	Chromatin interaction
ENSG00000175575	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530624	chr11:73114283-73646329	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
3	nsv530641	chr11:73358393-73638725	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	nsv1038105	chr11:73552023-73673836	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv1035977	chr11:73581224-73617653	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73499600-73583800	Weak transcription	Aorta	Aorta
2	chr11:73500400-73583800	Weak transcription	Colonic Mucosa	Colon
3	chr11:73518400-73584000	Weak transcription	Pancreas	Pancrea
4	chr11:73537400-73582600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr11:73539200-73583800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr11:73541800-73583600	Weak transcription	Esophagus	oesophagus
7	chr11:73549800-73583600	Weak transcription	GM12878-XiMat	blood
8	chr11:73550400-73582400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:73564400-73586000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr11:73567600-73582200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr11:73571400-73586000	Weak transcription	Right Atrium	heart
12	chr11:73571600-73586200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr11:73573000-73586200	Weak transcription	Fetal Brain Male	brain
14	chr11:73573200-73584000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr11:73575400-73586000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr11:73575600-73582600	Weak transcription	Fetal Kidney	kidney
17	chr11:73575600-73583200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr11:73575600-73583800	Weak transcription	Spleen	Spleen
19	chr11:73575800-73582200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr11:73575800-73583200	Weak transcription	Right Ventricle	heart
21	chr11:73575800-73583400	Weak transcription	Brain Angular Gyrus	brain
22	chr11:73575800-73583600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr11:73576000-73582400	Weak transcription	Adipose Nuclei	Adipose
24	chr11:73576000-73582400	Weak transcription	Brain Substantia Nigra	brain
25	chr11:73576000-73582600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr11:73576400-73582400	Weak transcription	Brain Hippocampus Middle	brain
27	chr11:73576400-73582600	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr11:73576400-73583000	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr11:73576400-73586000	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr11:73576600-73583200	Weak transcription	Colon Smooth Muscle	Colon
31	chr11:73576600-73583200	Weak transcription	Left Ventricle	heart
32	chr11:73576600-73584000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr11:73577600-73582600	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr11:73577800-73582400	Weak transcription	Lung	lung
35	chr11:73577800-73582800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr11:73578000-73582400	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr11:73578000-73582600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr11:73578000-73582600	Weak transcription	Hela-S3	cervix
39	chr11:73578000-73583600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
40	chr11:73578000-73583800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr11:73578000-73586400	Weak transcription	Fetal Heart	heart
42	chr11:73578200-73582200	Weak transcription	NH-A	brain
43	chr11:73578200-73582400	Weak transcription	Primary neutrophils fromperipheralblood	blood
44	chr11:73578200-73582400	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr11:73578200-73582600	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr11:73578200-73583200	Weak transcription	Rectal Smooth Muscle	rectum
47	chr11:73578200-73583400	Weak transcription	Ovary	ovary
48	chr11:73578400-73583400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr11:73578400-73583600	Weak transcription	HUVEC	blood vessel
50	chr11:73578400-73583600	Weak transcription	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links