Variant report

Variant	rs57007209
Chromosome Location	chr11:106028691-106028692
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs55696470	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56081415	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60590804	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60987753	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7120572	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048381	chr11:105945117-106561574	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv898358	chr11:105999580-106182251	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv430428	chr11:106005901-106173046	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106023200-106031000	Weak transcription	Osteobl	bone
2	chr11:106023200-106031200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr11:106024600-106030600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr11:106026800-106029800	Enhancers	Fetal Intestine Small	intestine
5	chr11:106026800-106030000	Enhancers	Fetal Intestine Large	intestine
6	chr11:106027200-106029200	Enhancers	Duodenum Mucosa	Duodenum
7	chr11:106027400-106029400	Weak transcription	Small Intestine	intestine
8	chr11:106027600-106030800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr11:106027600-106032800	Weak transcription	Rectal Smooth Muscle	rectum
10	chr11:106027800-106031200	Weak transcription	Colon Smooth Muscle	Colon
11	chr11:106028600-106029000	Enhancers	Dnd41	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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