Variant report

Variant	rs57009769
Chromosome Location	chr9:12934404-12934405
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10738300	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1332056	0.86[ASN][1000 genomes]
rs1332057	0.89[ASN][1000 genomes]
rs1332058	0.89[ASN][1000 genomes]
rs1332059	0.89[ASN][1000 genomes]
rs1332060	0.89[ASN][1000 genomes]
rs1332061	0.89[ASN][1000 genomes]
rs1412296	0.86[ASN][1000 genomes]
rs1412297	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16929942	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1819460	0.89[ASN][1000 genomes]
rs1888860	0.89[ASN][1000 genomes]
rs1929916	0.86[ASN][1000 genomes]
rs1929917	0.89[ASN][1000 genomes]
rs1953022	0.89[ASN][1000 genomes]
rs1953023	0.89[ASN][1000 genomes]
rs2095036	0.89[ASN][1000 genomes]
rs2104876	0.90[ASN][1000 genomes]
rs2382377	0.89[ASN][1000 genomes]
rs2382378	0.89[ASN][1000 genomes]
rs2382379	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35270390	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs55746363	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56042324	0.84[AMR][1000 genomes]
rs7029508	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7035514	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7038912	0.89[ASN][1000 genomes]
rs7043940	0.81[AMR][1000 genomes]
rs7854690	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs868338	0.89[ASN][1000 genomes]
rs883093	0.87[ASN][1000 genomes]
rs885132	0.89[ASN][1000 genomes]
rs885133	0.90[ASN][1000 genomes]
rs944620	0.87[ASN][1000 genomes]
rs944621	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498136	chr9:12387840-12984158	Genic enhancers Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv2422212	chr9:12448789-13127738	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv613615	chr9:12830070-12947238	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv613616	chr9:12922330-13018096	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv892576	chr9:12925921-13093345	Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv466258	chr9:12928475-12968196	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv613617	chr9:12928475-12968196	Weak transcription Active TSS Genic enhancers Enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv892577	chr9:12928475-12995112	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:12933200-12934800	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr9:12933200-12936000	Enhancers	NHDF-Ad	bronchial
3	chr9:12933200-12936600	Enhancers	Muscle Satellite Cultured Cells	--
4	chr9:12933400-12935200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr9:12933400-12935400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr9:12933400-12936000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr9:12933400-12936200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr9:12933400-12936200	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr9:12933400-12936800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr9:12933600-12934800	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr9:12933600-12934800	Enhancers	A549	lung
12	chr9:12933600-12934800	Enhancers	NHLF	lung
13	chr9:12933600-12936600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr9:12933800-12934800	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr9:12933800-12934800	Enhancers	Adipose Nuclei	Adipose
16	chr9:12933800-12936200	Enhancers	NHEK	skin
17	chr9:12933800-12936600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr9:12934000-12934800	Enhancers	H9 Cell Line	embryonic stem cell
19	chr9:12934000-12934800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr9:12934000-12934800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr9:12934000-12934800	Enhancers	Brain Angular Gyrus	brain
22	chr9:12934000-12934800	Enhancers	HSMMtube	muscle
23	chr9:12934000-12934800	Enhancers	Osteobl	bone
24	chr9:12934000-12935000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr9:12934000-12935200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr9:12934000-12935600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr9:12934000-12936000	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr9:12934200-12934800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr9:12934200-12934800	Enhancers	Brain Hippocampus Middle	brain
30	chr9:12934200-12934800	Enhancers	Hela-S3	cervix
31	chr9:12934200-12934800	Enhancers	HSMM	muscle
32	chr9:12934200-12935400	Enhancers	Brain Anterior Caudate	brain
33	chr9:12934200-12936000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr9:12934400-12934600	Enhancers	ES-I3 Cell Line	embryonic stem cell
35	chr9:12934400-12934800	Enhancers	HUES64 Cell Line	embryonic stem cell
36	chr9:12934400-12935000	Enhancers	iPS-15b Cell Line	embryonic stem cell
37	chr9:12934400-12935400	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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