Variant report

Variant	rs57013457
Chromosome Location	chr2:179188432-179188433
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs34874235	1.00[EUR][1000 genomes]
rs58187781	1.00[AMR][1000 genomes]
rs61440148	1.00[AMR][1000 genomes]
rs73030631	1.00[AMR][1000 genomes]
rs73032543	1.00[AMR][1000 genomes]
rs73032545	1.00[AMR][1000 genomes]
rs73032548	1.00[AMR][1000 genomes]
rs73032576	1.00[AMR][1000 genomes]
rs73034341	1.00[AMR][1000 genomes]
rs7563966	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009312	chr2:178924318-179215566	Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv536057	chr2:178924318-179215566	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv834466	chr2:179140792-179284778	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:179143200-179188600	Weak transcription	Brain Anterior Caudate	brain
2	chr2:179160200-179188600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr2:179164600-179200800	Weak transcription	Aorta	Aorta
4	chr2:179176200-179198000	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr2:179181000-179188600	Weak transcription	K562	blood
6	chr2:179183800-179188800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr2:179183800-179192600	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr2:179183800-179247800	Weak transcription	Psoas Muscle	Psoas
9	chr2:179185400-179188600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr2:179185400-179198200	Weak transcription	Fetal Lung	lung
11	chr2:179186000-179195000	Weak transcription	Liver	Liver
12	chr2:179186200-179188600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr2:179187600-179188600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr2:179188400-179189200	Enhancers	Ovary	ovary
15	chr2:179188400-179189400	Enhancers	Fetal Brain Male	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links