Variant report

Variant	rs570134918
Chromosome Location	chr6:35887977-35887978
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:27324243..27326637-chr6:35887924..35890289,2	MCF-7	breast:
2	chr15:68570051..68570582-chr6:35887669..35888429,2	Hela-S3	cervix:
3	chr6:35886849..35889245-chr6:35993978..35995751,2	MCF-7	breast:
4	chr6:35885785..35888471-chr6:35920108..35922574,2	K562	blood:
5	chr14:64970728..64971278-chr6:35887063..35888020,2	Hela-S3	cervix:
6	chr6:35838681..35841453-chr6:35887224..35888776,2	K562	blood:
7	chr6:35825264..35827531-chr6:35887069..35888745,2	K562	blood:
8	chr6:35887479..35890120-chr6:35993309..35995768,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000260657	Chromatin interaction
ENSG00000112062	Chromatin interaction
ENSG00000096063	Chromatin interaction
ENSG00000169018	Chromatin interaction
ENSG00000077238	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3430300	chr6:35549151-35959004	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	esv3403583	chr6:35887399-35889947	Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35885000-35888200	Transcr. at gene 5' and 3'	Dnd41	blood
2	chr6:35886000-35889200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:35886000-35889200	Active TSS	iPS-15b Cell Line	embryonic stem cell
4	chr6:35886000-35889800	Active TSS	ES-I3 Cell Line	embryonic stem cell
5	chr6:35886000-35890000	Active TSS	GM12878-XiMat	blood
6	chr6:35886200-35888200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
7	chr6:35886200-35888400	Flanking Active TSS	Primary hematopoietic stem cells	blood
8	chr6:35886200-35889400	Active TSS	Duodenum Smooth Muscle	Duodenum
9	chr6:35886200-35889600	Active TSS	Fetal Intestine Large	intestine
10	chr6:35886400-35888000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr6:35886400-35888000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:35886400-35888200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
13	chr6:35886400-35888200	Flanking Active TSS	HUVEC	blood vessel
14	chr6:35886400-35888400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr6:35886400-35888400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr6:35886400-35888400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr6:35886400-35889400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr6:35886400-35889400	Active TSS	Brain Anterior Caudate	brain
19	chr6:35886400-35889600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr6:35886400-35889600	Active TSS	Brain Cingulate Gyrus	brain
21	chr6:35886400-35889600	Active TSS	HMEC	breast
22	chr6:35886400-35890400	Active TSS	A549	lung
23	chr6:35886600-35888000	Flanking Active TSS	Primary T cells from cord blood	blood
24	chr6:35886600-35888200	Flanking Active TSS	Primary B cells from cord blood	blood
25	chr6:35886600-35888200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr6:35886600-35889000	Active TSS	Primary neutrophils fromperipheralblood	blood
27	chr6:35886600-35889200	Active TSS	Breast Myoepithelial Primary Cells	Breast
28	chr6:35886600-35889600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr6:35886800-35888000	Flanking Active TSS	Brain Germinal Matrix	brain
30	chr6:35886800-35888000	Flanking Active TSS	Fetal Brain Male	brain
31	chr6:35886800-35888200	Flanking Active TSS	Fetal Thymus	thymus
32	chr6:35886800-35889200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr6:35886800-35889200	Active TSS	HUES64 Cell Line	embryonic stem cell
34	chr6:35886800-35889200	Active TSS	Fetal Intestine Small	intestine
35	chr6:35886800-35889400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
36	chr6:35886800-35889400	Active TSS	H1 Cell Line	embryonic stem cell
37	chr6:35886800-35889400	Active TSS	H9 Cell Line	embryonic stem cell
38	chr6:35886800-35889400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr6:35886800-35889400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
40	chr6:35886800-35889400	Active TSS	NHLF	lung
41	chr6:35887000-35888000	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
42	chr6:35887000-35888000	Flanking Active TSS	Liver	Liver
43	chr6:35887000-35888200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
44	chr6:35887000-35888200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
45	chr6:35887000-35888200	Flanking Active TSS	Stomach Smooth Muscle	stomach
46	chr6:35887000-35888400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
47	chr6:35887000-35888400	Flanking Active TSS	Adipose Nuclei	Adipose
48	chr6:35887000-35889000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr6:35887000-35889200	Active TSS	HUES48 Cell Line	embryonic stem cell
50	chr6:35887000-35889200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links