Variant report
| Variant | rs570140064 |
|---|---|
| Chromosome Location | chr2:58478533-58478534 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:11)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:11 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | GABPA | chr2:58478490-58478928 | Hela-S3 | cervix: | n/a | n/a |
| 2 | TAF1 | chr2:58478520-58478905 | HepG2 | liver: | n/a | n/a |
| 3 | ZBTB33 | chr2:58478526-58479270 | K562 | blood: | n/a | n/a |
| 4 | POLR2A | chr2:58478486-58478887 | GM12878 | blood: | n/a | n/a |
| 5 | POLR2A | chr2:58478476-58478891 | Gliobla | brain: | n/a | n/a |
| 6 | POLR2A | chr2:58478479-58478552 | GM12878 | blood: | n/a | n/a |
| 7 | POLR2A | chr2:58478522-58478800 | Hela-S3 | cervix: | n/a | n/a |
| 8 | POLR2A | chr2:58478493-58478791 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 9 | TAF1 | chr2:58478479-58478920 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 10 | POLR2A | chr2:58478507-58478710 | HUVEC | blood vessel: | n/a | n/a |
| 11 | POLR2A | chr2:58478506-58479271 | H1-hESC | embryonic stem cell: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| EIF3FP3 | TF binding region |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv999042 | chr2:58326123-58530903 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 2 | nsv535734 | chr2:58326123-58530903 | ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 3 | nsv979006 | chr2:58477513-58480966 | Inactive region | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
