Variant report

Variant	rs57017827
Chromosome Location	chr6:109981875-109981876
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr6:109981706-109982309	HUVEC	blood vessel:	n/a	n/a
2	E2F4	chr6:109981774-109981984	MCF10A-Er-Src	breast:	n/a	n/a
3	FOS	chr6:109981733-109982136	MCF10A-Er-Src	breast:	n/a	n/a
4	SPI1	chr6:109981832-109982055	GM12891	blood:	n/a	n/a
5	TCF12	chr6:109981619-109982146	SK-N-SH	brain:	n/a	chr6:109981662-109981670
6	STAT3	chr6:109981855-109982055	MCF10A-Er-Src	breast:	n/a	n/a
7	STAT3	chr6:109981731-109981984	MCF10A-Er-Src	breast:	n/a	n/a
8	FOS	chr6:109981757-109982060	MCF10A-Er-Src	breast:	n/a	n/a
9	FOS	chr6:109981784-109982108	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
AK9	TF binding region

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11963127	1.00[AMR][1000 genomes]
rs11963483	0.86[AFR][1000 genomes]
rs11966371	0.94[AFR][1000 genomes]
rs11968736	0.86[AFR][1000 genomes]
rs11969939	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026012	chr6:109851638-109999379	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv604484	chr6:109851937-109997529	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1019389	chr6:109868058-109987502	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv538416	chr6:109868058-109987502	Genic enhancers ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv917318	chr6:109885195-109982375	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv949475	chr6:109907936-110160501	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv933105	chr6:109933270-110064342	ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
8	nsv817322	chr6:109933272-110070574	Strong transcription Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
9	nsv830769	chr6:109944334-110078120	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
10	nsv604485	chr6:109959269-110054486	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109933000-109985200	Weak transcription	Psoas Muscle	Psoas
2	chr6:109948000-109995000	Weak transcription	Brain Anterior Caudate	brain
3	chr6:109954400-109994800	Weak transcription	Brain Hippocampus Middle	brain
4	chr6:109960000-109984000	Weak transcription	Brain Cingulate Gyrus	brain
5	chr6:109961400-110000800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr6:109961600-110000600	Weak transcription	Thymus	Thymus
7	chr6:109962000-109983400	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr6:109965200-109992200	Weak transcription	Fetal Brain Female	brain
9	chr6:109965200-110000600	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr6:109965600-109983200	Weak transcription	Brain Substantia Nigra	brain
11	chr6:109965600-109983200	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr6:109965600-109990800	Weak transcription	Primary B cells from cord blood	blood
13	chr6:109966800-109991000	Weak transcription	Ovary	ovary
14	chr6:109966800-109993200	Weak transcription	Adipose Nuclei	Adipose
15	chr6:109967200-109986800	Weak transcription	Aorta	Aorta
16	chr6:109967200-109989800	Weak transcription	Gastric	stomach
17	chr6:109967200-109992600	Weak transcription	Left Ventricle	heart
18	chr6:109967800-109997000	Weak transcription	Stomach Smooth Muscle	stomach
19	chr6:109972400-109992200	Weak transcription	Liver	Liver
20	chr6:109974200-109992400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr6:109976000-109992800	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr6:109978000-110010600	Weak transcription	Brain Germinal Matrix	brain
23	chr6:109978200-109990800	Weak transcription	Primary T cells from cord blood	blood
24	chr6:109978400-109991200	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr6:109978600-109990800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr6:109978600-109991000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr6:109979600-109992600	Weak transcription	HSMMtube	muscle
28	chr6:109979600-110000600	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr6:109980000-109982800	Weak transcription	Lung	lung
30	chr6:109980200-109999800	Weak transcription	Pancreas	Pancrea
31	chr6:109980600-109998600	Weak transcription	Primary hematopoietic stem cells	blood
32	chr6:109980600-110011200	Weak transcription	Fetal Thymus	thymus
33	chr6:109981200-109983800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr6:109981200-109983800	Enhancers	NHEK	skin
35	chr6:109981200-109992600	Weak transcription	Primary B cells from peripheral blood	blood
36	chr6:109981400-109983600	Enhancers	HMEC	breast
37	chr6:109981400-109983800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr6:109981400-109984800	Enhancers	HUVEC	blood vessel
39	chr6:109981600-109982400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr6:109981600-109983600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr6:109981800-109982000	Enhancers	NHDF-Ad	bronchial
42	chr6:109981800-109982200	Enhancers	Primary hematopoietic stem cells short term culture	blood
43	chr6:109981800-109982200	Enhancers	Muscle Satellite Cultured Cells	--

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