Variant report

Variant	rs57020441
Chromosome Location	chr8:130489048-130489049
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs57140545	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015611	chr8:130449321-130502086	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv971607	chr8:130487651-130489151	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130475800-130492000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:130485600-130491400	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr8:130487800-130494800	Genic enhancers	K562	blood
4	chr8:130488000-130489400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr8:130488000-130489400	Enhancers	Dnd41	blood
6	chr8:130488000-130492600	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr8:130488200-130491600	Weak transcription	Stomach Smooth Muscle	stomach
8	chr8:130488400-130491400	Weak transcription	Colon Smooth Muscle	Colon
9	chr8:130488400-130491800	Weak transcription	Rectal Smooth Muscle	rectum
10	chr8:130488800-130489200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr8:130488800-130491600	Weak transcription	Fetal Stomach	stomach
12	chr8:130489000-130490200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr8:130489000-130490400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr8:130489000-130490400	Enhancers	Osteobl	bone
15	chr8:130489000-130490600	Enhancers	NH-A	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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