Variant report

Variant	rs570210795
Chromosome Location	chr7:102793889-102793890
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HDAC2	chr7:102793770-102794072	K562	blood:	n/a	n/a
2	RCOR1	chr7:102793771-102794024	K562	blood:	n/a	n/a
3	HDAC2	chr7:102793631-102794149	K562	blood:	n/a	n/a
4	RCOR1	chr7:102793813-102793985	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:102784051..102785716-chr7:102793385..102795157,2	K562	blood:
2	chr7:102789269..102791743-chr7:102791840..102795059,5	MCF-7	breast:

Variant related genes	Relation type
NAPEPLD	TF binding region
ENSG00000236848	TF binding region
ENSG00000161048	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868996	chr7:102332827-102991361	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv831084	chr7:102778908-102964970	Strong transcription Active TSS Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv966872	chr7:102791751-102798505	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv3372063	chr7:102793600-102796412	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102790200-102803200	Weak transcription	Gastric	stomach
2	chr7:102790400-102794000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr7:102790400-102794000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr7:102790400-102796800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr7:102790800-102795600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr7:102790800-102795800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr7:102790800-102795800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr7:102790800-102796200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr7:102791000-102794000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr7:102791000-102795600	Weak transcription	Brain Substantia Nigra	brain
11	chr7:102791000-102795800	Weak transcription	Primary B cells from peripheral blood	blood
12	chr7:102791000-102795800	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr7:102791000-102795800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr7:102791000-102796200	Weak transcription	Spleen	Spleen
15	chr7:102791200-102794000	Weak transcription	GM12878-XiMat	blood
16	chr7:102791200-102794200	Enhancers	Fetal Intestine Large	intestine
17	chr7:102791200-102794800	Enhancers	K562	blood
18	chr7:102792200-102796000	Weak transcription	Small Intestine	intestine
19	chr7:102792400-102794600	Enhancers	Rectal Mucosa Donor 31	rectum
20	chr7:102792600-102794000	Weak transcription	Stomach Mucosa	stomach
21	chr7:102793000-102794400	Enhancers	Sigmoid Colon	Sigmoid Colon
22	chr7:102793200-102794200	Active TSS	Brain Hippocampus Middle	brain
23	chr7:102793200-102794400	Enhancers	Colonic Mucosa	Colon
24	chr7:102793200-102794600	Active TSS	Brain Anterior Caudate	brain
25	chr7:102793400-102794000	Active TSS	Liver	Liver
26	chr7:102793400-102794200	Active TSS	Brain Cingulate Gyrus	brain
27	chr7:102793400-102796000	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr7:102793600-102794000	Weak transcription	HepG2	liver
29	chr7:102793800-102794000	Weak transcription	Duodenum Mucosa	Duodenum

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