Variant report
| Variant | rs57023688 |
|---|---|
| Chromosome Location | chr6:80497449-80497450 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:80488032..80490000-chr6:80496422..80499072,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs13340426 | 0.82[ASN][1000 genomes] |
| rs2038291 | 0.82[ASN][1000 genomes] |
| rs2144191 | 0.82[ASN][1000 genomes] |
| rs59663953 | 0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs60212389 | 0.84[ASN][1000 genomes] |
| rs6925597 | 0.82[ASN][1000 genomes] |
| rs6941963 | 0.86[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73463445 | 0.82[ASN][1000 genomes] |
| rs73465424 | 0.90[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs73465425 | 0.88[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs73465428 | 0.97[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs761606 | 0.88[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs7748805 | 0.82[ASN][1000 genomes] |
| rs7767376 | 0.82[ASN][1000 genomes] |
| rs9443700 | 0.82[ASN][1000 genomes] |
| rs9443701 | 0.82[ASN][1000 genomes] |
| rs9443711 | 0.82[ASN][1000 genomes] |
| rs9443712 | 0.82[ASN][1000 genomes] |
| rs9448778 | 0.82[ASN][1000 genomes] |
| rs9448787 | 0.82[ASN][1000 genomes] |
| rs9448801 | 0.82[ASN][1000 genomes] |
| rs9448802 | 0.82[ASN][1000 genomes] |
| rs9448803 | 0.82[ASN][1000 genomes] |
| rs9448804 | 0.82[ASN][1000 genomes] |
| rs9448805 | 0.82[ASN][1000 genomes] |
| rs9448806 | 0.82[ASN][1000 genomes] |
| rs9885895 | 0.82[ASN][1000 genomes] |
| rs9885898 | 0.82[ASN][1000 genomes] |
| rs9885900 | 0.82[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1028607 | chr6:79853272-80767716 | Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 43 gene(s) | inside rSNPs | diseases |
| 2 | nsv1032347 | chr6:80284809-80694778 | Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 15 gene(s) | inside rSNPs | diseases |
| 3 | nsv1021143 | chr6:80400195-80598163 | Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:80488400-80502200 | Weak transcription | Fetal Brain Male | brain |
