Variant report

Variant	rs57025631
Chromosome Location	chr1:150607284-150607285
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:150550018..150552514-chr1:150604592..150607981,3	K562	blood:
2	chr1:150605711..150607575-chr1:150609209..150611848,2	MCF-7	breast:
3	chr1:150606933..150609483-chr1:150622223..150624505,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ADAMTSL4-7	chr1:150602100-150609632	NONHSAT006322

Variant related genes	Relation type
ENSG00000143384	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs6691535	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006838	chr1:150440214-150722783	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	175 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150602600-150608000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr1:150603000-150607800	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr1:150603000-150608000	Weak transcription	Fetal Intestine Large	intestine
4	chr1:150603000-150608200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr1:150603000-150619000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr1:150603000-150619600	Weak transcription	Small Intestine	intestine
7	chr1:150603200-150607600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr1:150603200-150607600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr1:150603200-150607600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr1:150603200-150607800	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr1:150603200-150608000	Weak transcription	Primary hematopoietic stem cells	blood
12	chr1:150603200-150608200	Weak transcription	Stomach Mucosa	stomach
13	chr1:150603200-150608200	Weak transcription	Hela-S3	cervix
14	chr1:150603200-150616600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr1:150603200-150617400	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr1:150603200-150618600	Weak transcription	Stomach Smooth Muscle	stomach
17	chr1:150603200-150619600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr1:150603200-150619600	Weak transcription	Fetal Intestine Small	intestine
19	chr1:150603200-150619600	Weak transcription	Fetal Stomach	stomach
20	chr1:150603200-150619800	Weak transcription	Brain Cingulate Gyrus	brain
21	chr1:150603200-150620000	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr1:150603200-150620000	Weak transcription	Gastric	stomach
23	chr1:150603200-150620000	Weak transcription	Rectal Smooth Muscle	rectum
24	chr1:150603200-150620600	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr1:150603200-150620600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr1:150603200-150661200	Weak transcription	Brain Substantia Nigra	brain
27	chr1:150603400-150608000	Weak transcription	Placenta	Placenta
28	chr1:150603400-150616800	Weak transcription	Liver	Liver
29	chr1:150603400-150618000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr1:150603400-150618200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr1:150603400-150618200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr1:150603400-150618200	Weak transcription	Adipose Nuclei	Adipose
33	chr1:150603400-150618800	Weak transcription	Osteobl	bone
34	chr1:150603400-150619000	Weak transcription	Fetal Muscle Trunk	muscle
35	chr1:150603400-150620000	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr1:150603400-150620400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr1:150603400-150620600	Weak transcription	Right Ventricle	heart
38	chr1:150603400-150620600	Weak transcription	A549	lung
39	chr1:150603400-150620800	Weak transcription	Spleen	Spleen
40	chr1:150603400-150621600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr1:150603400-150621600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr1:150603400-150668200	Weak transcription	Brain Germinal Matrix	brain
43	chr1:150603600-150607400	Weak transcription	Primary B cells from cord blood	blood
44	chr1:150603600-150607600	Weak transcription	Primary B cells from peripheral blood	blood
45	chr1:150603600-150609000	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr1:150603600-150615800	Weak transcription	Fetal Muscle Leg	muscle
47	chr1:150603600-150618200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr1:150603600-150619800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr1:150603800-150607800	Enhancers	iPS-15b Cell Line	embryonic stem cell
50	chr1:150603800-150619400	Weak transcription	Primary T killer memory cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links