Variant report

Variant	rs570266382
Chromosome Location	chr22:23668908-23668909
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HEY1	chr22:23668459-23669258	K562	blood:	n/a	n/a
2	CTCF	chr22:23668504-23669091	A549	lung:	n/a	chr22:23668703-23668721
3	EBF1	chr22:23668873-23669176	GM12878	blood:	n/a	n/a
4	EBF1	chr22:23668797-23669192	GM12878	blood:	n/a	n/a
5	ZBTB33	chr22:23668777-23669419	K562	blood:	n/a	n/a
6	POLR2A	chr22:23668822-23669093	A549	lung:	n/a	n/a
7	SPI1	chr22:23668902-23669355	K562	blood:	n/a	chr22:23669304-23669317 chr22:23669305-23669318 chr22:23669053-23669060
8	SPI1	chr22:23668812-23669440	GM12878	blood:	n/a	chr22:23669304-23669317 chr22:23669305-23669318 chr22:23669053-23669060
9	IRF4	chr22:23668391-23669112	GM12878	blood:	n/a	n/a
10	NR3C1	chr22:23668757-23669138	A549	lung:	n/a	n/a
11	FOXA1	chr22:23668812-23669222	HepG2	liver:	n/a	n/a
12	SIX5	chr22:23668468-23669201	K562	blood:	n/a	n/a
13	SPI1	chr22:23668772-23669407	GM12891	blood:	n/a	chr22:23669304-23669317 chr22:23669305-23669318 chr22:23669053-23669060
14	CTCF	chr22:23668464-23669011	A549	lung:	n/a	chr22:23668703-23668721
15	SPI1	chr22:23668825-23669425	GM12891	blood:	n/a	chr22:23669304-23669317 chr22:23669305-23669318 chr22:23669053-23669060
16	JUND	chr22:23668901-23669080	HepG2	liver:	n/a	n/a
17	PAX5	chr22:23668840-23669147	GM12878	blood:	n/a	chr22:23669053-23669062
18	POU2F2	chr22:23668394-23669235	GM12878	blood:	n/a	chr22:23668713-23668727 chr22:23668558-23668570
19	NR3C1	chr22:23668521-23669205	A549	lung:	n/a	n/a
20	RXRA	chr22:23668707-23669149	HepG2	liver:	n/a	n/a
21	NR3C1	chr22:23668782-23669235	A549	lung:	n/a	n/a
22	POLR2A	chr22:23668761-23669176	GM12878	blood:	n/a	n/a
23	SP1	chr22:23668811-23669113	HepG2	liver:	n/a	n/a
24	GATA2	chr22:23668208-23669399	K562	blood:	n/a	chr22:23669053-23669063 chr22:23669309-23669320
25	CTCF	chr22:23668760-23668910	NHDF-neo	bronchial:	n/a	n/a
26	ZBTB33	chr22:23668280-23669248	K562	blood:	n/a	n/a
27	FOSL2	chr22:23668450-23668993	HepG2	liver:	n/a	chr22:23668765-23668774 chr22:23668773-23668782
28	CTCF	chr22:23668484-23668913	A549	lung:	n/a	chr22:23668703-23668721
29	FOSL2	chr22:23668436-23669158	HepG2	liver:	n/a	chr22:23668765-23668774 chr22:23668773-23668782
30	FOXA2	chr22:23668826-23669111	A549	lung:	n/a	n/a
31	SIX5	chr22:23668435-23669399	K562	blood:	n/a	n/a
32	CTCF	chr22:23668485-23668945	K562	blood:	n/a	chr22:23668703-23668721
33	CTCF	chr22:23668800-23668950	HPAF	blood vessel:	n/a	n/a
34	NR3C1	chr22:23668660-23669194	A549	lung:	n/a	n/a
35	NR3C1	chr22:23668695-23669246	A549	lung:	n/a	n/a
36	CTCF	chr22:23668461-23669118	A549	lung:	n/a	chr22:23668703-23668721
37	TCF12	chr22:23668813-23669040	HepG2	liver:	n/a	n/a
38	USF1	chr22:23668838-23669103	HepG2	liver:	n/a	n/a
39	TCF3	chr22:23668757-23669137	GM12878	blood:	n/a	n/a
40	GABPA	chr22:23668878-23669091	Hela-S3	cervix:	n/a	n/a
41	FOXA2	chr22:23668811-23669192	A549	lung:	n/a	n/a
42	NR3C1	chr22:23668609-23669278	A549	lung:	n/a	n/a
43	USF1	chr22:23668294-23669286	A549	lung:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-BCR-1	chr22:23668803-23668978	XLOC_014170

Variant related genes	Relation type
ENSG00000214526	TF binding region

Extended variants
information (count: 20 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056324	chr22:23055148-23750989	Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
2	nsv1057659	chr22:23400739-24138788	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
3	nsv9876	chr22:23563331-23923059	Strong transcription Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv482557	chr22:23584948-23741799	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv531550	chr22:23589667-24012550	Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
6	esv2762117	chr22:23592136-23996869	Strong transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
7	nsv1063476	chr22:23596683-23989388	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
8	nsv544617	chr22:23596683-23989388	Strong transcription Genic enhancers Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
9	nsv1059951	chr22:23597270-23973060	Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
10	nsv1060339	chr22:23603429-23984195	Bivalent/Poised TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
11	nsv544618	chr22:23603429-23984195	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
12	nsv1059384	chr22:23614429-23984195	Bivalent Enhancer Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
13	nsv544619	chr22:23614429-23984195	Enhancers Genic enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
14	nsv588601	chr22:23632665-23979219	Bivalent Enhancer Active TSS Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
15	esv17028	chr22:23649375-23672982	Genic enhancers Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
16	nsv914578	chr22:23650987-23708020	Weak transcription Bivalent Enhancer Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
17	nsv914579	chr22:23650987-23995056	Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
18	nsv979654	chr22:23652511-23693612	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
19	esv1814193	chr22:23668217-23671204	Weak transcription	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
20	esv20013	chr22:23668424-23672856	Weak transcription	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:23657800-23670800	Weak transcription	Fetal Brain Female	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links