Variant report

Variant	rs570277477
Chromosome Location	chr4:15458769-15458770
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:15233266..15233775-chr4:15458638..15459594,3	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv2757923	chr4:15444617-15749520	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv2759227	chr4:15444617-15749520	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	esv2760903	chr4:15458598-15464619	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15438400-15458800	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr4:15438800-15471200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:15448400-15458800	Weak transcription	Primary T cells from cord blood	blood
4	chr4:15453000-15458800	Weak transcription	Brain Hippocampus Middle	brain
5	chr4:15453600-15459000	Weak transcription	Brain Anterior Caudate	brain
6	chr4:15453600-15459000	Weak transcription	Fetal Muscle Leg	muscle
7	chr4:15454000-15458800	Weak transcription	Fetal Lung	lung
8	chr4:15454200-15458800	Weak transcription	Rectal Smooth Muscle	rectum
9	chr4:15454200-15458800	Weak transcription	Stomach Mucosa	stomach
10	chr4:15454200-15459000	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr4:15454400-15458800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr4:15454400-15458800	Weak transcription	Colon Smooth Muscle	Colon
13	chr4:15454800-15459000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr4:15454800-15459000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr4:15456200-15459600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr4:15456200-15459800	Enhancers	NHLF	lung
17	chr4:15456400-15458800	Enhancers	Monocytes-CD14+_RO01746	blood
18	chr4:15456400-15459800	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr4:15457200-15458800	Weak transcription	HSMM	muscle
20	chr4:15457400-15458800	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr4:15457400-15459000	Weak transcription	Brain Substantia Nigra	brain
22	chr4:15457600-15458800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr4:15457600-15458800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr4:15457600-15458800	Weak transcription	Liver	Liver
25	chr4:15457600-15458800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr4:15457600-15458800	Weak transcription	NHDF-Ad	bronchial
27	chr4:15457600-15458800	Weak transcription	Osteobl	bone
28	chr4:15457600-15459000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr4:15457800-15458800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr4:15457800-15458800	Weak transcription	Adipose Nuclei	Adipose
31	chr4:15458000-15459600	Enhancers	Aorta	Aorta
32	chr4:15458200-15459600	Enhancers	Primary hematopoietic stem cells	blood
33	chr4:15458200-15459800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr4:15458200-15459800	Enhancers	Ovary	ovary
35	chr4:15458400-15458800	Enhancers	Primary B cells from cord blood	blood
36	chr4:15458400-15459000	Enhancers	Stomach Smooth Muscle	stomach
37	chr4:15458400-15459200	Enhancers	Spleen	Spleen
38	chr4:15458400-15459400	Enhancers	Fetal Brain Female	brain
39	chr4:15458400-15459600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
40	chr4:15458400-15459800	Enhancers	Primary B cells from peripheral blood	blood
41	chr4:15458400-15460000	Enhancers	Fetal Kidney	kidney
42	chr4:15458600-15458800	Enhancers	Left Ventricle	heart
43	chr4:15458600-15458800	Enhancers	Right Atrium	heart
44	chr4:15458600-15459000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr4:15458600-15459000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr4:15458600-15459200	Enhancers	Cortex derived primary cultured neurospheres	brain
47	chr4:15458600-15459200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr4:15458600-15459200	Enhancers	Placenta	Placenta
49	chr4:15458600-15459200	Enhancers	Placenta Amnion	Placenta Amnion
50	chr4:15458600-15459400	Enhancers	Primary hematopoietic stem cells short term culture	blood

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