Variant report

Variant	rs570283527
Chromosome Location	chr11:34338993-34338994
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:34336235..34339899-chr11:34377222..34380179,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166016	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757435	chr11:34220504-34370236	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2759816	chr11:34220504-34370236	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv818809	chr11:34239730-34354076	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv2753052	chr11:34247462-34358300	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv897205	chr11:34248229-34507213	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv897207	chr11:34253683-34621004	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
7	nsv897208	chr11:34257064-34562247	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
8	nsv897209	chr11:34309519-34548906	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
9	nsv818810	chr11:34337564-34354076	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
10	esv2753225	chr11:34338342-34354865	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34327200-34340400	Weak transcription	Gastric	stomach
2	chr11:34330600-34340000	Weak transcription	Aorta	Aorta
3	chr11:34330600-34340200	Weak transcription	Primary hematopoietic stem cells	blood
4	chr11:34330800-34339000	Enhancers	Fetal Heart	heart
5	chr11:34330800-34339600	Weak transcription	Fetal Intestine Small	intestine
6	chr11:34331800-34340000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr11:34332800-34346200	Weak transcription	Lung	lung
8	chr11:34333800-34339800	Weak transcription	Small Intestine	intestine
9	chr11:34334000-34339000	Enhancers	Fetal Thymus	thymus
10	chr11:34334800-34339800	Weak transcription	Colon Smooth Muscle	Colon
11	chr11:34335200-34339800	Weak transcription	Duodenum Mucosa	Duodenum
12	chr11:34335400-34340000	Weak transcription	Placenta	Placenta
13	chr11:34335800-34339000	Enhancers	Brain Substantia Nigra	brain
14	chr11:34335800-34341200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr11:34335800-34342200	Enhancers	Liver	Liver
16	chr11:34336200-34341000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr11:34336200-34358200	Weak transcription	Thymus	Thymus
18	chr11:34336600-34339000	Enhancers	Brain Germinal Matrix	brain
19	chr11:34336800-34341200	Enhancers	Left Ventricle	heart
20	chr11:34337000-34339000	Enhancers	Brain Anterior Caudate	brain
21	chr11:34337000-34339200	Enhancers	Brain Hippocampus Middle	brain
22	chr11:34337000-34341000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr11:34337200-34339000	Enhancers	Brain Cingulate Gyrus	brain
24	chr11:34337200-34339000	Enhancers	Brain Inferior Temporal Lobe	brain
25	chr11:34337200-34339000	Enhancers	Fetal Brain Female	brain
26	chr11:34337200-34341200	Enhancers	HSMM	muscle
27	chr11:34337400-34339600	Weak transcription	NHDF-Ad	bronchial
28	chr11:34337400-34339800	Enhancers	A549	lung
29	chr11:34337600-34339000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr11:34337600-34339200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr11:34337600-34339200	Enhancers	Cortex derived primary cultured neurospheres	brain
32	chr11:34337600-34342400	Enhancers	HepG2	liver
33	chr11:34337800-34339000	Enhancers	Ovary	ovary
34	chr11:34337800-34339800	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr11:34337800-34349000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr11:34338000-34340400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr11:34338200-34339800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr11:34338200-34339800	Weak transcription	Stomach Smooth Muscle	stomach
39	chr11:34338200-34340000	Weak transcription	Pancreas	Pancrea
40	chr11:34338200-34341000	Weak transcription	Fetal Muscle Leg	muscle
41	chr11:34338400-34340200	Weak transcription	Primary monocytes fromperipheralblood	blood
42	chr11:34338400-34340800	Enhancers	Rectal Mucosa Donor 31	rectum
43	chr11:34338600-34339000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr11:34338600-34339800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr11:34338600-34339800	Weak transcription	Primary neutrophils fromperipheralblood	blood
46	chr11:34338600-34339800	Weak transcription	Psoas Muscle	Psoas
47	chr11:34338600-34340000	Weak transcription	Right Atrium	heart
48	chr11:34338600-34340200	Weak transcription	Right Ventricle	heart
49	chr11:34338600-34340400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr11:34338600-34344200	Weak transcription	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links