Variant report

Variant	rs570288466
Chromosome Location	chr11:67143687-67143688
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr11:67140889-67143973	A549	lung:	n/a	chr11:67141604-67141611 chr11:67143538-67143554 chr11:67140948-67140964 chr11:67141185-67141199
2	SP1	chr11:67140841-67144091	A549	lung:	n/a	chr11:67143748-67143762 chr11:67141289-67141303 chr11:67141574-67141588 chr11:67141470-67141484 chr11:67141363-67141372 chr11:67141370-67141379 chr11:67141258-67141272 chr11:67141368-67141380 chr11:67140960-67140974 chr11:67140956-67140968 chr11:67143704-67143718 chr11:67141262-67141276 chr11:67143744-67143753 chr11:67141362-67141374 chr11:67142152-67142166 chr11:67141462-67141474 chr11:67142824-67142838 chr11:67140957-67140966 chr11:67142668-67142677 chr11:67143749-67143758 chr11:67141369-67141378 chr11:67141462-67141474 chr11:67140958-67140967 chr11:67141362-67141374 chr11:67141463-67141472 chr11:67141255-67141269 chr11:67142658-67142670 chr11:67142659-67142668 chr11:67142655-67142669 chr11:67142659-67142669 chr11:67141365-67141379 chr11:67141370-67141379 chr11:67143743-67143757 chr11:67141244-67141258 chr11:67141368-67141380 chr11:67142658-67142670 chr11:67140956-67140968
3	REST	chr11:67142935-67144099	A549	lung:	n/a	chr11:67143221-67143241 chr11:67143223-67143231 chr11:67143059-67143072 chr11:67143569-67143582
4	BCL3	chr11:67142738-67143900	A549	lung:	n/a	n/a
5	MAX	chr11:67140849-67144150	A549	lung:	n/a	chr11:67141256-67141266 chr11:67141367-67141377
6	POLR2A	chr11:67143302-67143942	A549	lung:	n/a	n/a
7	POLR2A	chr11:67143383-67143724	K562	blood:	n/a	n/a
8	POLR2A	chr11:67143647-67143891	A549	lung:	n/a	n/a
9	SP1	chr11:67140380-67144001	A549	lung:	n/a	chr11:67143748-67143762 chr11:67141289-67141303 chr11:67141574-67141588 chr11:67141470-67141484 chr11:67141363-67141372 chr11:67141370-67141379 chr11:67141258-67141272 chr11:67141368-67141380 chr11:67140960-67140974 chr11:67140956-67140968 chr11:67143704-67143718 chr11:67141262-67141276 chr11:67143744-67143753 chr11:67141362-67141374 chr11:67142152-67142166 chr11:67141462-67141474 chr11:67142824-67142838 chr11:67140957-67140966 chr11:67142668-67142677 chr11:67143749-67143758 chr11:67141369-67141378 chr11:67141462-67141474 chr11:67140958-67140967 chr11:67141362-67141374 chr11:67141463-67141472 chr11:67141255-67141269 chr11:67142658-67142670 chr11:67142659-67142668 chr11:67142655-67142669 chr11:67142659-67142669 chr11:67141365-67141379 chr11:67141370-67141379 chr11:67143743-67143757 chr11:67141244-67141258 chr11:67141368-67141380 chr11:67142658-67142670 chr11:67140956-67140968
10	POLR2A	chr11:67142775-67143931	A549	lung:	n/a	n/a
11	TCF12	chr11:67137930-67144339	A549	lung:	n/a	chr11:67138193-67138203 chr11:67139958-67139965 chr11:67139242-67139249 chr11:67141661-67141671 chr11:67144056-67144066 chr11:67138192-67138199 chr11:67142524-67142532 chr11:67139957-67139967 chr11:67142516-67142526 chr11:67139956-67139963
12	SIN3AK20	chr11:67143289-67143949	A549	lung:	n/a	n/a
13	TAF1	chr11:67142889-67144010	A549	lung:	n/a	n/a
14	BCL3	chr11:67142887-67143940	A549	lung:	n/a	n/a
15	FOSL2	chr11:67142798-67143786	A549	lung:	n/a	chr11:67142827-67142836
16	EP300	chr11:67140820-67143932	A549	lung:	n/a	chr11:67141604-67141611 chr11:67143538-67143554 chr11:67140948-67140964 chr11:67141185-67141199
17	MAX	chr11:67137318-67145655	A549	lung:	n/a	chr11:67138167-67138177 chr11:67141256-67141266 chr11:67138019-67138029 chr11:67141367-67141377 chr11:67139214-67139223
18	JUND	chr11:67138885-67143692	A549	lung:	n/a	chr11:67141685-67141694 chr11:67141991-67142001 chr11:67141990-67142002 chr11:67141990-67142001 chr11:67141992-67142000 chr11:67141993-67142004 chr11:67142329-67142340 chr11:67141991-67142001 chr11:67140956-67140965 chr11:67142827-67142836 chr11:67141991-67142001
19	POLR2A	chr11:67143380-67143878	MCF-7	breast:	n/a	n/a
20	POLR2A	chr11:67143249-67143702	K562	blood:	n/a	n/a
21	GATA3	chr11:67138557-67145601	A549	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:66821897..66826528-chr11:67139094..67144065,11	MCF-7	breast:
2	chr11:67083205..67091159-chr11:67142322..67150295,9	MCF-7	breast:
3	chr11:67053474..67057507-chr11:67138689..67143945,8	MCF-7	breast:
4	chr11:67142650..67146172-chr11:67164311..67167140,3	K562	blood:
5	chr11:67143181..67146172-chr11:67164311..67167140,2	K562	blood:
6	chr11:67141684..67144612-chr14:62266117..62268626,2	MCF-7	breast:
7	chr11:67031883..67034489-chr11:67142861..67144652,2	K562	blood:
8	chr11:67069246..67073295-chr11:67139634..67145393,8	MCF-7	breast:
9	chr11:67085218..67086846-chr11:67141974..67144447,2	K562	blood:
10	chr11:67055479..67057173-chr11:67142777..67145596,2	K562	blood:
11	chr11:67030856..67037366-chr11:67138319..67144892,13	MCF-7	breast:
12	chr11:67116951..67127260-chr11:67135118..67146037,42	K562	blood:

Variant related genes	Relation type
CLCF1	TF binding region
ENSG00000256514	TF binding region
ENSG00000172932	Chromatin interaction
ENSG00000173020	Chromatin interaction
ENSG00000172531	Chromatin interaction
ENSG00000175482	Chromatin interaction
ENSG00000172830	Chromatin interaction
ENSG00000173156	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv933183	chr11:67008447-67160993	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
3	nsv897796	chr11:67021518-67186000	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
4	nsv897797	chr11:67023040-67293234	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	206 gene(s)	inside rSNPs	diseases
5	nsv1043037	chr11:67027193-67357425	Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
6	nsv468603	chr11:67033076-67164495	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
7	nsv555253	chr11:67033076-67164495	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
8	nsv897801	chr11:67033076-67432479	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	236 gene(s)	inside rSNPs	diseases
9	nsv1047890	chr11:67058231-67184436	Flanking Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
10	nsv1048230	chr11:67058231-67252397	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	146 gene(s)	inside rSNPs	diseases
11	nsv897804	chr11:67090571-67224278	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
12	nsv1039205	chr11:67135246-67252397	Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
13	esv1818769	chr11:67138811-67300457	Flanking Active TSS Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	167 gene(s)	inside rSNPs	diseases
14	esv1798859	chr11:67139954-67272983	Active TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	154 gene(s)	inside rSNPs	diseases
15	esv3334171	chr11:67142026-67144324	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:67141800-67143800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
2	chr11:67141800-67143800	Bivalent Enhancer	Fetal Brain Female	brain
3	chr11:67141800-67144000	Bivalent Enhancer	Fetal Muscle Leg	muscle
4	chr11:67141800-67144200	Bivalent Enhancer	Brain Germinal Matrix	brain
5	chr11:67141800-67144200	Enhancers	Placenta Amnion	Placenta Amnion
6	chr11:67141800-67152200	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr11:67142000-67143800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
8	chr11:67142000-67144000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
9	chr11:67142000-67144000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:67142000-67144000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr11:67142000-67144000	Enhancers	Primary hematopoietic stem cells	blood
12	chr11:67142000-67144000	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
13	chr11:67142000-67144200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
14	chr11:67142000-67144200	Bivalent Enhancer	Fetal Stomach	stomach
15	chr11:67142000-67144600	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr11:67142000-67147600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr11:67142000-67147600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr11:67142000-67149800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr11:67142200-67143800	Enhancers	Primary T helper cells fromperipheralblood	blood
20	chr11:67142200-67143800	Enhancers	Brain Anterior Caudate	brain
21	chr11:67142200-67144800	Weak transcription	Spleen	Spleen
22	chr11:67142200-67145000	Weak transcription	Gastric	stomach
23	chr11:67142400-67143800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr11:67142400-67143800	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
25	chr11:67142400-67144000	Enhancers	Stomach Smooth Muscle	stomach
26	chr11:67142400-67144000	Enhancers	NHLF	lung
27	chr11:67142400-67144600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr11:67142400-67145600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr11:67142400-67146400	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr11:67142400-67146400	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr11:67142400-67146800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr11:67142400-67147000	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr11:67142600-67143800	Enhancers	HSMM	muscle
34	chr11:67142600-67143800	Enhancers	NH-A	brain
35	chr11:67142600-67144000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
36	chr11:67142600-67144000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr11:67142600-67144000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr11:67142600-67144200	Enhancers	Osteobl	bone
39	chr11:67142600-67144600	Weak transcription	NHEK	skin
40	chr11:67142600-67144800	Weak transcription	Stomach Mucosa	stomach
41	chr11:67142600-67145400	Enhancers	K562	blood
42	chr11:67142600-67145600	Enhancers	Breast Myoepithelial Primary Cells	Breast
43	chr11:67142600-67146400	Weak transcription	Primary neutrophils fromperipheralblood	blood
44	chr11:67142600-67146400	Weak transcription	Lung	lung
45	chr11:67142600-67146600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr11:67142600-67147600	Enhancers	Muscle Satellite Cultured Cells	--
47	chr11:67142600-67147800	Enhancers	HMEC	breast
48	chr11:67142800-67144000	Bivalent Enhancer	Fetal Brain Male	brain
49	chr11:67142800-67144600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr11:67143000-67143800	Bivalent Enhancer	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links