Variant report

Variant	rs570289650
Chromosome Location	chr1:158902014-158902015
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:158900682..158902203-chr1:158976628..158979178,2	K562	blood:

Variant related genes	Relation type
ENSG00000163565	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002401	chr1:158712627-158972031	Flanking Active TSS Strong transcription Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv3376764	chr1:158761947-158998617	Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv872484	chr1:158863845-158909164	Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv872485	chr1:158863845-158922287	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1007597	chr1:158874806-158934301	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv525964	chr1:158901127-158902344	Active TSS Weak transcription Flanking Active TSS Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv518819	chr1:158901127-158903252	Active TSS Flanking Active TSS Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:158900000-158904600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr1:158900600-158902200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
3	chr1:158900600-158904400	Active TSS	Primary T cells fromperipheralblood	blood
4	chr1:158900600-158904400	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
5	chr1:158900800-158903800	Active TSS	Primary T killer memory cells from peripheral blood	blood
6	chr1:158901000-158902200	Active TSS	Rectal Mucosa Donor 31	rectum
7	chr1:158901000-158902800	Active TSS	Rectal Mucosa Donor 29	rectum
8	chr1:158901000-158903800	Active TSS	Primary B cells from cord blood	blood
9	chr1:158901000-158903800	Active TSS	Primary T helper naive cells fromperipheralblood	blood
10	chr1:158901000-158903800	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
11	chr1:158901000-158904000	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
12	chr1:158901000-158904200	Active TSS	Primary T helper cells PMA-I stimulated	--
13	chr1:158901200-158902800	Active TSS	Adipose Nuclei	Adipose
14	chr1:158901200-158904200	Active TSS	Primary T helper naive cells from peripheral blood	blood
15	chr1:158901200-158904200	Active TSS	Primary T regulatory cells fromperipheralblood	blood
16	chr1:158901200-158904400	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
17	chr1:158901400-158902200	Active TSS	Primary B cells from peripheral blood	blood
18	chr1:158901400-158902200	Active TSS	Fetal Thymus	thymus
19	chr1:158901400-158902800	Active TSS	Dnd41	blood
20	chr1:158901400-158903800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr1:158901400-158904200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr1:158901400-158904200	Active TSS	Primary T killer naive cells fromperipheralblood	blood
23	chr1:158901600-158902200	Active TSS	Thymus	Thymus
24	chr1:158901600-158902400	Active TSS	Duodenum Mucosa	Duodenum
25	chr1:158901600-158903800	Active TSS	Primary T cells from cord blood	blood
26	chr1:158901800-158902200	Active TSS	Liver	Liver
27	chr1:158901800-158902200	Active TSS	Placenta	Placenta
28	chr1:158901800-158902400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr1:158901800-158904200	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
30	chr1:158902000-158902400	Enhancers	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links