Variant report

Variant	rs570303121
Chromosome Location	chr6:166797713-166797714
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFIC	chr6:166796154-166797783	GM12878	blood:	n/a	n/a
2	CEBPB	chr6:166797474-166797819	K562	blood:	n/a	chr6:166797642-166797653
3	POLR2A	chr6:166796136-166797917	HepG2	liver:	n/a	n/a
4	POLR2A	chr6:166795157-166798107	HepG2	liver:	n/a	n/a
5	HEY1	chr6:166796161-166797763	HepG2	liver:	n/a	chr6:166796785-166796800
6	TEAD4	chr6:166796981-166797899	HepG2	liver:	n/a	n/a
7	CEBPB	chr6:166797537-166797739	HepG2	liver:	n/a	chr6:166797642-166797653
8	CEBPB	chr6:166797504-166797721	K562	blood:	n/a	chr6:166797642-166797653
9	CEBPB	chr6:166797516-166797728	HepG2	liver:	n/a	chr6:166797642-166797653
10	CEBPB	chr6:166797188-166797727	Hela-S3	cervix:	n/a	chr6:166797642-166797653
11	CEBPB	chr6:166797499-166797808	HepG2	liver:	n/a	chr6:166797642-166797653

No.	Distal block	Cell Line	Cell type
1	chr6:166753320..166757958-chr6:166794622..166799153,8	K562	blood:
2	chr6:166746293..166747904-chr6:166796894..166799021,2	K562	blood:
3	chr6:166743072..166748840-chr6:166793771..166798653,8	K562	blood:
4	chr6:166754173..166757774-chr6:166795355..166798060,3	MCF-7	breast:
5	chr6:166751804..166757558-chr6:166793969..166799153,5	K562	blood:
6	chr6:166740985..166743870-chr6:166796738..166798607,2	MCF-7	breast:
7	chr6:166796680..166799689-chr6:166808021..166810118,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FGFR1OP-2	chr6:166796677-166798312	ENSG00000261420.1
2	lnc-FGFR1OP-2	chr6:166796964-166802453	NONHSAT116046

Variant related genes	Relation type
MPC1	TF binding region
ENSG00000198818	Chromatin interaction
ENSG00000233231	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3490076	chr6:166727901-167306743	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	esv3490077	chr6:166727901-167306743	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
3	esv3376653	chr6:166783590-166798116	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv3329582	chr6:166795187-166797735	Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv3340680	chr6:166795587-166798135	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv523548	chr6:166796433-166819774	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166794400-166797800	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr6:166794400-166798000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:166794600-166797800	Active TSS	Brain Angular Gyrus	brain
4	chr6:166794600-166797800	Active TSS	NHEK	skin
5	chr6:166794800-166797800	Active TSS	Breast Myoepithelial Primary Cells	Breast
6	chr6:166794800-166797800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr6:166794800-166797800	Active TSS	Pancreatic Islets	Pancreatic Islet
8	chr6:166794800-166797800	Active TSS	Stomach Mucosa	stomach
9	chr6:166794800-166798000	Active TSS	Duodenum Mucosa	Duodenum
10	chr6:166795000-166797800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr6:166795000-166797800	Active TSS	iPS-15b Cell Line	embryonic stem cell
12	chr6:166795000-166797800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr6:166795000-166797800	Active TSS	Fetal Intestine Small	intestine
14	chr6:166795000-166797800	Active TSS	Skeletal Muscle Male	skeletal muscle
15	chr6:166795000-166798000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr6:166795000-166798000	Active TSS	Brain Hippocampus Middle	brain
17	chr6:166795000-166798000	Active TSS	Colonic Mucosa	Colon
18	chr6:166795000-166798000	Active TSS	Hela-S3	cervix
19	chr6:166795200-166797800	Active TSS	H9 Cell Line	embryonic stem cell
20	chr6:166795200-166797800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr6:166795200-166797800	Active TSS	Duodenum Smooth Muscle	Duodenum
22	chr6:166795200-166797800	Active TSS	Fetal Brain Female	brain
23	chr6:166795200-166798000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr6:166795200-166798000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr6:166795200-166798000	Active TSS	Muscle Satellite Cultured Cells	--
26	chr6:166795200-166798000	Active TSS	Rectal Smooth Muscle	rectum
27	chr6:166795200-166798000	Active TSS	Osteobl	bone
28	chr6:166795400-166797800	Active TSS	Brain Cingulate Gyrus	brain
29	chr6:166795400-166797800	Active TSS	Pancreas	Pancrea
30	chr6:166795400-166798000	Active TSS	Gastric	stomach
31	chr6:166795800-166797800	Active TSS	iPS-20b Cell Line	embryonic stem cell
32	chr6:166795800-166798000	Active TSS	Rectal Mucosa Donor 29	rectum
33	chr6:166796000-166797800	Active TSS	H1 Cell Line	embryonic stem cell
34	chr6:166796000-166797800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr6:166796000-166797800	Active TSS	HMEC	breast
36	chr6:166796000-166798000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr6:166796000-166798000	Active TSS	Rectal Mucosa Donor 31	rectum
38	chr6:166796200-166797800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr6:166796400-166797800	Active TSS	HepG2	liver
40	chr6:166796800-166797800	Flanking Active TSS	Primary B cells from cord blood	blood
41	chr6:166796800-166797800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
42	chr6:166797000-166797800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
43	chr6:166797000-166797800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr6:166797000-166798000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
45	chr6:166797200-166797800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr6:166797200-166797800	Flanking Active TSS	Placenta	Placenta
47	chr6:166797400-166797800	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
48	chr6:166797400-166797800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
49	chr6:166797400-166797800	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
50	chr6:166797400-166797800	Weak transcription	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links