Variant report

Variant	rs57031097
Chromosome Location	chr7:16309029-16309030
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:7)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:16307891..16309646-chr7:16460887..16462647,2	K562	blood:
2	chr7:16307737..16311020-chr7:16684818..16687152,3	K562	blood:
3	chr7:16302978..16309646-chr7:16456908..16462647,13	K562	blood:
4	chr7:16307417..16309237-chr7:16685352..16687215,2	K562	blood:

(count:7 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AC006035.2-1	chr7:16308482-16310229	ENSG00000229688
2	lnc-AC006035.2-1	chr7:16308874-16309215	ENSG00000241044
3	lnc-AC006035.2-1	chr7:16308482-16310229	NONHSAT119292
4	lnc-AC006035.2-1	chr7:16308482-16310229	NONHSAT119293
5	lnc-AC006035.2-1	chr7:16308482-16310229	NONHSAT119294
6	lnc-AC006035.2-1	chr7:16308482-16309502	NONHSAT119296
7	lnc-AC006035.2-1	chr7:16308482-16309502	NONHSAT119295

No data

No data

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12112931	0.81[AFR][1000 genomes]
rs17169351	0.81[AFR][1000 genomes]
rs56859428	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57824034	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59670548	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv948950	chr7:16168925-16395434	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	esv2757214	chr7:16236162-16334228	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	esv2759514	chr7:16236162-16527390	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	esv34298	chr7:16251754-16324185	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv1022388	chr7:16251992-16431864	Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv1017498	chr7:16262300-16313476	Enhancers Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	nsv1022814	chr7:16262300-16339988	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	nsv470133	chr7:16269632-16312056	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
10	esv2758105	chr7:16272822-16527390	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16305200-16313200	Weak transcription	Fetal Lung	lung
2	chr7:16305600-16312800	Weak transcription	Gastric	stomach
3	chr7:16307000-16311600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr7:16307200-16311400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr7:16307200-16312800	Weak transcription	Ovary	ovary
6	chr7:16308400-16309200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr7:16308400-16309200	Enhancers	NHEK	skin
8	chr7:16308400-16309400	Enhancers	Fetal Heart	heart
9	chr7:16308600-16309200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr7:16308600-16309200	Enhancers	HSMMtube	muscle
11	chr7:16308600-16309200	Enhancers	NH-A	brain
12	chr7:16308800-16310400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr7:16308800-16318000	Weak transcription	Left Ventricle	heart
14	chr7:16309000-16309200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr7:16309000-16310400	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr7:16309000-16310400	Transcr. at gene 5' and 3'	K562	blood
17	chr7:16309000-16311800	Weak transcription	Fetal Stomach	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
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