Variant report

Variant	rs57034058
Chromosome Location	chr4:148000222-148000223
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs72945781	1.00[AMR][1000 genomes]
rs72947726	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880240	chr4:147905897-148032003	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1016598	chr4:147931134-148012064	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1024629	chr4:147987351-148277008	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:147998800-148001600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:147999000-148001600	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr4:147999200-148000400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr4:147999200-148000400	Enhancers	Left Ventricle	heart
5	chr4:147999400-148000400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr4:147999400-148000400	Weak transcription	Lung	lung
7	chr4:147999400-148002800	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr4:147999600-148000400	Enhancers	Right Ventricle	heart
9	chr4:147999800-148000400	Enhancers	Adipose Nuclei	Adipose
10	chr4:147999800-148000800	Enhancers	Placenta Amnion	Placenta Amnion
11	chr4:147999800-148001800	Enhancers	Brain Germinal Matrix	brain
12	chr4:148000000-148000400	Enhancers	Colon Smooth Muscle	Colon
13	chr4:148000000-148000400	Enhancers	Fetal Lung	lung
14	chr4:148000000-148000400	Enhancers	Ovary	ovary
15	chr4:148000000-148000400	Enhancers	Right Atrium	heart
16	chr4:148000000-148000400	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr4:148000000-148000800	Flanking Active TSS	Stomach Smooth Muscle	stomach
18	chr4:148000000-148001600	Enhancers	Fetal Stomach	stomach
19	chr4:148000200-148000400	Active TSS	Brain Anterior Caudate	brain
20	chr4:148000200-148000400	Active TSS	Brain Hippocampus Middle	brain
21	chr4:148000200-148000400	Enhancers	Fetal Brain Female	brain
22	chr4:148000200-148000400	Active TSS	Skeletal Muscle Female	skeletal muscle
23	chr4:148000200-148000600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr4:148000200-148000600	Enhancers	Placenta	Placenta
25	chr4:148000200-148000600	Active TSS	Rectal Smooth Muscle	rectum
26	chr4:148000200-148000800	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
27	chr4:148000200-148000800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr4:148000200-148000800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr4:148000200-148000800	Active TSS	Brain Substantia Nigra	brain
30	chr4:148000200-148001000	Enhancers	Duodenum Smooth Muscle	Duodenum
31	chr4:148000200-148001000	Flanking Active TSS	Fetal Heart	heart
32	chr4:148000200-148001200	Enhancers	Fetal Brain Male	brain
33	chr4:148000200-148001200	Bivalent Enhancer	HUVEC	blood vessel

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