Variant report

Variant	rs57035035
Chromosome Location	chr2:67319066-67319067
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10180944	0.92[ASN][1000 genomes]
rs13404435	0.92[ASN][1000 genomes]
rs17032937	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17032952	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17032968	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17032971	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17032991	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17033005	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17033035	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17033037	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17033040	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17033053	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17033086	0.98[AFR][1000 genomes]
rs3770658	0.92[ASN][1000 genomes]
rs55850737	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58926892	0.85[ASN][1000 genomes]
rs61400784	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6546276	0.88[ASN][1000 genomes]
rs6546277	0.85[ASN][1000 genomes]
rs6546281	0.93[ASN][1000 genomes]
rs6722059	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6751541	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72890017	0.88[ASN][1000 genomes]
rs72890019	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72890026	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72890028	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72890031	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72890032	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72890033	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72890036	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72890038	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72890041	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73937650	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7566710	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs976794	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008584	chr2:67168244-67703601	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv535775	chr2:67168244-67703601	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	esv2756926	chr2:67266707-67337017	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2759058	chr2:67266707-67465662	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	esv2757805	chr2:67287279-67465662	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv428397	chr2:67287279-67465662	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	esv3459599	chr2:67319023-67334625	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	esv3459600	chr2:67319023-67334625	Weak transcription Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67313000-67323400	Weak transcription	Fetal Kidney	kidney
2	chr2:67317400-67319600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links