Variant report

Variant	rs57035165
Chromosome Location	chr19:41140158-41140159
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:23)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:23 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:41138506..41141309-chr19:41145835..41148542,2	K562	blood:
2	chr19:41114238..41117053-chr19:41138599..41141054,2	MCF-7	breast:
3	chr19:41108346..41108882-chr19:41140151..41140936,2	MCF-7	breast:
4	chr19:41110443..41112198-chr19:41139975..41141049,7	K562	blood:
5	chr19:41109242..41109896-chr19:41140100..41140769,2	MCF-7	breast:
6	chr19:41128414..41130195-chr19:41139038..41140697,2	K562	blood:
7	chr19:41054805..41055750-chr19:41139940..41141097,7	K562	blood:
8	chr19:41137973..41140624-chr19:41195435..41197106,2	K562	blood:
9	chr19:41111107..41112381-chr19:41140111..41141106,14	MCF-7	breast:
10	chr19:41117116..41117889-chr19:41140151..41140682,2	MCF-7	breast:
11	chr19:41129580..41130220-chr19:41140147..41141024,3	MCF-7	breast:
12	chr19:40811339..40811896-chr19:41140074..41141080,5	MCF-7	breast:
13	chr19:41046810..41047754-chr19:41140135..41140963,3	MCF-7	breast:
14	chr19:41054778..41055355-chr19:41140107..41141020,3	MCF-7	breast:
15	chr19:41034668..41035614-chr19:41140119..41140983,4	K562	blood:
16	chr19:41054801..41055777-chr19:41140103..41141411,6	MCF-7	breast:
17	chr19:41131908..41134628-chr19:41138432..41140727,3	MCF-7	breast:
18	chr19:41028969..41029809-chr19:41139865..41140952,3	MCF-7	breast:
19	chr19:41104018..41105293-chr19:41140150..41141109,6	MCF-7	breast:
20	chr19:41107436..41108654-chr19:41139781..41141019,4	K562	blood:
21	chr19:41128695..41131520-chr19:41139038..41140642,2	K562	blood:
22	chr19:41106279..41108422-chr19:41140097..41141024,8	MCF-7	breast:
23	chr19:41107627..41110532-chr19:41140107..41142181,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000090006	Chromatin interaction
ENSG00000105245	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10401623	0.81[AMR][1000 genomes]
rs10406476	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1830682	chr19:40880127-41270055	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	139 gene(s)	inside rSNPs	diseases
2	nsv911714	chr19:41006426-41165252	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv911715	chr19:41014922-41141434	Bivalent Enhancer Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
4	nsv1057634	chr19:41019512-41174259	Enhancers Active TSS Strong transcription Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
5	nsv911717	chr19:41023511-41141434	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
6	nsv911719	chr19:41033109-41147087	Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
7	nsv911720	chr19:41033109-41156940	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
8	nsv911722	chr19:41040334-41176403	Bivalent Enhancer Enhancers Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
9	nsv911723	chr19:41075990-41195279	Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
10	nsv1064699	chr19:41086506-41174259	Genic enhancers Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
11	nsv911724	chr19:41089505-41165252	Bivalent/Poised TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
12	nsv911726	chr19:41090190-41141434	Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
13	nsv911727	chr19:41111069-41200511	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
14	nsv911728	chr19:41111069-41211056	Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
15	nsv870022	chr19:41113071-41178982	Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	27 gene(s)	inside rSNPs	diseases
16	esv1800615	chr19:41127465-41270055	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:41117000-41140200	Weak transcription	Brain Angular Gyrus	brain
2	chr19:41120800-41140200	Weak transcription	Brain Anterior Caudate	brain
3	chr19:41121400-41140200	Weak transcription	Primary hematopoietic stem cells	blood
4	chr19:41123400-41140400	Weak transcription	Liver	Liver
5	chr19:41126200-41140200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr19:41127600-41140200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr19:41128800-41140200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr19:41130000-41140200	Weak transcription	Brain Germinal Matrix	brain
9	chr19:41130200-41140200	Weak transcription	Right Atrium	heart
10	chr19:41130400-41140200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr19:41132400-41140200	Weak transcription	HMEC	breast
12	chr19:41133000-41140200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr19:41133000-41140200	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr19:41133000-41140400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr19:41133400-41140200	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr19:41133800-41140200	Weak transcription	Rectal Smooth Muscle	rectum
17	chr19:41133800-41140400	Weak transcription	Esophagus	oesophagus
18	chr19:41134000-41140200	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr19:41135400-41140200	Weak transcription	Colonic Mucosa	Colon
20	chr19:41135800-41140200	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr19:41136000-41140200	Weak transcription	Adipose Nuclei	Adipose
22	chr19:41136000-41145600	Weak transcription	Ovary	ovary
23	chr19:41136400-41140400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr19:41136600-41140200	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr19:41136600-41140200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr19:41136600-41140200	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr19:41136800-41140200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr19:41136800-41140400	Weak transcription	Lung	lung
29	chr19:41136800-41140800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr19:41137000-41140200	Weak transcription	Left Ventricle	heart
31	chr19:41137200-41140200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr19:41137200-41145400	Weak transcription	Right Ventricle	heart
33	chr19:41137800-41140200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr19:41138200-41140200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr19:41138200-41140200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr19:41138200-41140200	Enhancers	NHEK	skin
37	chr19:41138200-41140600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr19:41138400-41140200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr19:41138400-41140200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr19:41138400-41140200	Enhancers	Osteobl	bone
41	chr19:41138800-41140200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr19:41138800-41140400	Enhancers	Muscle Satellite Cultured Cells	--
43	chr19:41139000-41140200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr19:41139000-41140200	Enhancers	HSMM	muscle
45	chr19:41139000-41140400	Enhancers	NHDF-Ad	bronchial
46	chr19:41139200-41140400	Enhancers	Fetal Stomach	stomach
47	chr19:41139600-41140200	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
48	chr19:41139600-41140200	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
49	chr19:41139800-41140200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
50	chr19:41139800-41140200	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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