Variant report

Variant	rs57037655
Chromosome Location	chr17:64486267-64486268
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10512512	0.82[EUR][1000 genomes]
rs11869711	0.87[EUR][1000 genomes]
rs17771145	0.87[EUR][1000 genomes]
rs2535659	0.83[AFR][1000 genomes]
rs57078491	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58134548	0.87[EUR][1000 genomes]
rs62070448	0.86[EUR][1000 genomes]
rs62070449	0.85[EUR][1000 genomes]
rs62070451	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs62070456	0.83[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs6504440	0.80[AFR][1000 genomes]
rs9907773	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1057876	chr17:64401469-64802341	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
2	nsv543407	chr17:64401469-64802341	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1064970	chr17:64410784-64486268	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv457883	chr17:64410915-64510410	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv575897	chr17:64410915-64510410	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv457887	chr17:64410915-64518507	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv575898	chr17:64410915-64518507	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv817351	chr17:64420296-64742555	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv948353	chr17:64454960-64619767	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv948335	chr17:64454960-64745690	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	nsv1056765	chr17:64486268-64661890	Strong transcription Enhancers Weak transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:64465400-64489000	Weak transcription	Gastric	stomach
2	chr17:64465400-64492400	Weak transcription	Aorta	Aorta
3	chr17:64467200-64487200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr17:64467600-64487000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr17:64467600-64487200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr17:64468600-64487000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr17:64469600-64488800	Weak transcription	Spleen	Spleen
8	chr17:64471800-64487000	Weak transcription	NHDF-Ad	bronchial
9	chr17:64472000-64487800	Weak transcription	NHLF	lung
10	chr17:64473200-64488800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr17:64474600-64487400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr17:64476800-64487400	Weak transcription	Osteobl	bone
13	chr17:64477200-64486800	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr17:64477400-64487400	Weak transcription	Small Intestine	intestine
15	chr17:64477600-64487200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr17:64479000-64499000	Weak transcription	Duodenum Mucosa	Duodenum
17	chr17:64481600-64488800	Weak transcription	Stomach Smooth Muscle	stomach
18	chr17:64481800-64487000	Weak transcription	K562	blood
19	chr17:64481800-64487800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr17:64481800-64488600	Weak transcription	NH-A	brain
21	chr17:64481800-64489600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr17:64482000-64487200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr17:64482000-64487200	Weak transcription	Brain Hippocampus Middle	brain
24	chr17:64482000-64487400	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr17:64482000-64487400	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr17:64482000-64487400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr17:64482000-64487400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr17:64482000-64488600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr17:64482000-64488800	Weak transcription	Brain Cingulate Gyrus	brain
30	chr17:64482000-64488800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr17:64482000-64488800	Weak transcription	Fetal Brain Female	brain
32	chr17:64482200-64487600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr17:64482200-64488200	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr17:64482400-64488000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr17:64482600-64487200	Weak transcription	Primary T cells from cord blood	blood
36	chr17:64482800-64487000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr17:64483800-64492800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr17:64484800-64487400	Weak transcription	A549	lung
39	chr17:64484800-64489000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr17:64485000-64491000	Enhancers	HepG2	liver
41	chr17:64485000-64499200	Weak transcription	Fetal Kidney	kidney
42	chr17:64485600-64490600	Enhancers	Primary T helper cells PMA-I stimulated	--
43	chr17:64485600-64490800	Enhancers	Primary T helper cells fromperipheralblood	blood
44	chr17:64485800-64487000	Weak transcription	Brain Substantia Nigra	brain
45	chr17:64485800-64487400	Weak transcription	Liver	Liver
46	chr17:64485800-64487600	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr17:64485800-64487600	Weak transcription	Brain Anterior Caudate	brain
48	chr17:64485800-64488800	Weak transcription	Fetal Intestine Small	intestine
49	chr17:64485800-64490800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
50	chr17:64485800-64498800	Weak transcription	Fetal Intestine Large	intestine

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