Variant report

Variant	rs57039525
Chromosome Location	chr9:101087406-101087407
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:101083842..101086347-chr9:101087149..101089530,2	K562	blood:
2	chr9:101085788..101088232-chr9:101098487..101101467,2	K562	blood:
3	chr9:101086196..101088017-chr9:101089801..101091987,3	K562	blood:
4	chr9:101077814..101081761-chr9:101084202..101087593,3	K562	blood:
5	chr9:101087150..101090422-chr9:101102751..101107163,4	K562	blood:
6	chr9:101076038..101079314-chr9:101086093..101088880,3	K562	blood:
7	chr9:101085806..101088798-chr9:101299467..101301907,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10122226	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16914928	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16914931	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7019826	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7032827	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7035648	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831663	chr9:100941048-101109492	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv831664	chr9:101024862-101205637	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv519818	chr9:101024887-101092316	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats	Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101078400-101088800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:101085400-101087600	Enhancers	HUVEC	blood vessel
3	chr9:101085600-101089000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr9:101085600-101093800	Weak transcription	Lung	lung
5	chr9:101086000-101089600	Weak transcription	Right Ventricle	heart
6	chr9:101086800-101091400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr9:101087000-101088000	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr9:101087200-101090400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr9:101087200-101090400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr9:101087200-101091200	Weak transcription	NHLF	lung
11	chr9:101087200-101093800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr9:101087200-101094000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr9:101087400-101091200	Weak transcription	HMEC	breast
14	chr9:101087400-101091200	Weak transcription	NHEK	skin
15	chr9:101087400-101091400	Weak transcription	NHDF-Ad	bronchial
16	chr9:101087400-101091600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr9:101087400-101091600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr9:101087400-101096000	Weak transcription	Osteobl	bone
19	chr9:101087400-101096400	Weak transcription	NH-A	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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