Variant report

Variant	rs570408125
Chromosome Location	chr7:62865728-62865729
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:62865652-62865747	ProgFib	skin:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF680-38	chr7:62865220-62865778	NONHSAT120918

Variant related genes	Relation type
VN1R33P	TF binding region

Extended variants
information (count: 27 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:27 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888187	chr7:61976744-62881775	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv1026246	chr7:61987161-62984310	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
3	nsv533415	chr7:62030665-62985503	ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
4	nsv917772	chr7:62181098-62909513	ZNF genes & repeats Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
5	nsv888219	chr7:62353275-62944123	ZNF genes & repeats Active TSS Enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
6	nsv1015861	chr7:62365180-62879551	ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
7	esv3478284	chr7:62531504-63351786	ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription	TF binding region CpG island lncRNA miRNA	44 gene(s)	inside rSNPs	diseases
8	esv3478287	chr7:62531504-63351786	ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island lncRNA miRNA	44 gene(s)	inside rSNPs	diseases
9	nsv1020393	chr7:62619341-62984310	ZNF genes & repeats Active TSS	TF binding region CpG island lncRNA	30 gene(s)	inside rSNPs	diseases
10	nsv1023293	chr7:62619341-63109895	ZNF genes & repeats Active TSS Weak transcription	TF binding region CpG island lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
11	nsv607300	chr7:62622297-62895725	ZNF genes & repeats Active TSS	TF binding region CpG island lncRNA	25 gene(s)	inside rSNPs	diseases
12	nsv1016602	chr7:62623431-63339807	ZNF genes & repeats Bivalent/Poised TSS Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA miRNA	39 gene(s)	inside rSNPs	diseases
13	nsv888230	chr7:62705018-63294907	ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers	TF binding region CpG island lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
14	nsv528613	chr7:62735470-62935337	ZNF genes & repeats	TF binding region CpG island lncRNA	20 gene(s)	inside rSNPs	diseases
15	nsv888233	chr7:62761336-62955063	ZNF genes & repeats	TF binding region CpG island lncRNA	22 gene(s)	inside rSNPs	diseases
16	nsv888235	chr7:62803799-62944123	ZNF genes & repeats	TF binding region CpG island lncRNA	19 gene(s)	inside rSNPs	diseases
17	nsv966813	chr7:62843152-62983788	ZNF genes & repeats	TF binding region CpG island lncRNA	13 gene(s)	inside rSNPs	diseases
18	nsv888236	chr7:62862076-62921796	ZNF genes & repeats	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
19	nsv888237	chr7:62862076-62925996	ZNF genes & repeats	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
20	nsv888238	chr7:62862076-62925996	ZNF genes & repeats	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
21	nsv888239	chr7:62862076-62935337	ZNF genes & repeats	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
22	nsv888240	chr7:62862076-62939356	ZNF genes & repeats	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
23	nsv888241	chr7:62862076-62939356	ZNF genes & repeats	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
24	nsv888242	chr7:62862076-62944123	ZNF genes & repeats	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
25	nsv888243	chr7:62862076-62979947	ZNF genes & repeats	TF binding region CpG island lncRNA	7 gene(s)	inside rSNPs	diseases
26	nsv888244	chr7:62862076-62979947	ZNF genes & repeats	TF binding region CpG island lncRNA	7 gene(s)	inside rSNPs	diseases
27	nsv8111	chr7:62862995-62908237	Inactive region	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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