Variant report

Variant	rs57041357
Chromosome Location	chr12:106377674-106377675
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:106346252..106348542-chr12:106377078..106379837,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12299601	1.00[AFR][1000 genomes]
rs12317583	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832508	chr12:106198797-106409112	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv832509	chr12:106363888-106516221	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106372000-106380800	Weak transcription	Osteobl	bone
2	chr12:106372000-106381600	Weak transcription	NHLF	lung
3	chr12:106373200-106381000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr12:106375600-106378400	Enhancers	HSMM	muscle
5	chr12:106375600-106378800	Enhancers	HSMMtube	muscle
6	chr12:106375800-106378400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr12:106376000-106378400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr12:106376000-106378400	Enhancers	HMEC	breast
9	chr12:106376400-106378200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr12:106376400-106378200	Enhancers	NHEK	skin
11	chr12:106376400-106379200	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr12:106376600-106381000	Weak transcription	Psoas Muscle	Psoas
13	chr12:106376800-106378200	Enhancers	Muscle Satellite Cultured Cells	--
14	chr12:106376800-106378200	Enhancers	Fetal Heart	heart
15	chr12:106377000-106378200	Enhancers	NH-A	brain
16	chr12:106377200-106377800	Enhancers	Ovary	ovary
17	chr12:106377200-106378000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr12:106377200-106378000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr12:106377200-106378000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr12:106377200-106378200	Enhancers	NHDF-Ad	bronchial
21	chr12:106377400-106377800	Enhancers	Fetal Lung	lung
22	chr12:106377400-106378000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr12:106377400-106381000	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr12:106377600-106377800	Enhancers	H9 Cell Line	embryonic stem cell
25	chr12:106377600-106377800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
26	chr12:106377600-106377800	Enhancers	Fetal Muscle Leg	muscle
27	chr12:106377600-106378000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr12:106377600-106378000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr12:106377600-106378000	Enhancers	Fetal Stomach	stomach
30	chr12:106377600-106378200	Enhancers	Esophagus	oesophagus

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