Variant report

Variant	rs570464579
Chromosome Location	chr9:97496223-97496224
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:97494353..97497226-chr9:97497507..97500698,3	K562	blood:
2	chr9:97494182..97496611-chr9:97502044..97503943,2	K562	blood:
3	chr9:97488878..97491636-chr9:97495830..97497347,2	MCF-7	breast:
4	chr9:97495948..97498258-chr9:97507078..97508866,2	K562	blood:
5	chr9:97487875..97491312-chr9:97494821..97498928,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000148120	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1041922	chr9:97444976-97536753	Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv2764145	chr9:97495261-97505608	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97489600-97496400	Weak transcription	Left Ventricle	heart
2	chr9:97489600-97496400	Weak transcription	Pancreas	Pancrea
3	chr9:97489600-97503200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr9:97489600-97504000	Weak transcription	Ovary	ovary
5	chr9:97489600-97506000	Weak transcription	Lung	lung
6	chr9:97489600-97524800	Weak transcription	Esophagus	oesophagus
7	chr9:97489800-97496400	Weak transcription	Psoas Muscle	Psoas
8	chr9:97489800-97496600	Weak transcription	Brain Substantia Nigra	brain
9	chr9:97489800-97502000	Weak transcription	Fetal Intestine Large	intestine
10	chr9:97489800-97502200	Weak transcription	Stomach Smooth Muscle	stomach
11	chr9:97489800-97505200	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr9:97489800-97505800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr9:97489800-97505800	Weak transcription	Right Ventricle	heart
14	chr9:97489800-97508000	Weak transcription	Primary B cells from peripheral blood	blood
15	chr9:97489800-97511000	Weak transcription	Fetal Muscle Trunk	muscle
16	chr9:97489800-97511400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr9:97489800-97511600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr9:97489800-97521600	Weak transcription	Fetal Thymus	thymus
19	chr9:97489800-97522000	Weak transcription	Thymus	Thymus
20	chr9:97489800-97522400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr9:97490000-97496400	Weak transcription	Adipose Nuclei	Adipose
22	chr9:97490000-97496400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr9:97490000-97496400	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr9:97490000-97496600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr9:97490000-97497000	Weak transcription	NH-A	brain
26	chr9:97490000-97498800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr9:97490000-97502200	Weak transcription	Brain Angular Gyrus	brain
28	chr9:97490000-97502400	Weak transcription	Fetal Kidney	kidney
29	chr9:97490000-97505400	Weak transcription	HMEC	breast
30	chr9:97490000-97505600	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr9:97490000-97510600	Weak transcription	Primary T cells from cord blood	blood
32	chr9:97490000-97510800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr9:97490000-97510800	Weak transcription	Primary T helper cells fromperipheralblood	blood
34	chr9:97490000-97510800	Weak transcription	Fetal Brain Female	brain
35	chr9:97490000-97510800	Weak transcription	NHDF-Ad	bronchial
36	chr9:97490000-97511600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr9:97490000-97511600	Weak transcription	Osteobl	bone
38	chr9:97490000-97512200	Weak transcription	Colon Smooth Muscle	Colon
39	chr9:97490000-97519400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr9:97490000-97521600	Weak transcription	Rectal Smooth Muscle	rectum
41	chr9:97490200-97496400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr9:97490200-97496400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr9:97490200-97496600	Weak transcription	Fetal Intestine Small	intestine
44	chr9:97490200-97496600	Weak transcription	Fetal Stomach	stomach
45	chr9:97490200-97497400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr9:97490200-97499000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr9:97490200-97502400	Weak transcription	Brain Cingulate Gyrus	brain
48	chr9:97490200-97502600	Weak transcription	Primary B cells from cord blood	blood
49	chr9:97490200-97504600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr9:97490200-97508800	Weak transcription	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links