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Variant report
Variant
rs570468986
Chromosome Location
chr18:25828373-25828374
allele
C/T
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:0)
CpG islands (count:0)
Chromatin interactive region (count:1)
LncRNA region (count:0)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
No data
No data
(count:1 , 50 per page) page:
1
No.
Distal block
Cell Line
Cell type
Cell Stage
1
chr18:25828025..25830927-chr20:45947091..45949515,2
MCF-7
breast:
No data
No data
No data
Variant related genes
Relation type
ENSG00000267882
Chromatin interaction
ENSG00000101040
Chromatin interaction
Extended variants information (count: 4 )
Associated traits (count: 0)
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
No.
Variant name
Chromosome position
Chromatin state
Related regulatory elements
Target genes
Extended variants
Associated traits
1
nsv9622
chr18:25749905-26032816
Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'
TF binding regionCpG islandChromatin interactive regionlncRNA
5 gene(s)
inside rSNPs
diseases
2
esv2480689
chr18:25827295-25828818
Enhancers
Chromatin interactive region
2 gene(s)
inside rSNPs
diseases
3
esv9090
chr18:25827645-25828425
Inactive region
Chromatin interactive region
2 gene(s)
inside rSNPs
diseases
4
esv2180428
chr18:25827686-25828406
Inactive region
Chromatin interactive region
2 gene(s)
inside rSNPs
diseases
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links