Variant report

Variant	rs57049387
Chromosome Location	chr15:57946562-57946563
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs55767806	0.82[AFR][1000 genomes]
rs55822645	0.83[AFR][1000 genomes]
rs56931196	1.00[AFR][1000 genomes]
rs57589057	0.80[AFR][1000 genomes]
rs57780160	0.83[AFR][1000 genomes]
rs57874684	0.83[AFR][1000 genomes]
rs58478264	0.83[AFR][1000 genomes]
rs59012941	0.83[AFR][1000 genomes]
rs74016318	0.83[AFR][1000 genomes]
rs74016329	0.83[AFR][1000 genomes]
rs74016369	1.00[AFR][1000 genomes]
rs74016370	1.00[AFR][1000 genomes]
rs74016371	1.00[AFR][1000 genomes]
rs74016380	1.00[AFR][1000 genomes]
rs8026450	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045611	chr15:57350965-58070807	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv1054547	chr15:57600488-57977659	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv530682	chr15:57912502-58108285	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1038667	chr15:57933076-58481870	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv542400	chr15:57933076-58481870	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57919400-57946800	Weak transcription	Fetal Lung	lung
2	chr15:57919400-57959400	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr15:57932200-57967400	Weak transcription	Aorta	Aorta
4	chr15:57933400-57982600	Weak transcription	Esophagus	oesophagus
5	chr15:57936600-57954000	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr15:57937000-57946800	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr15:57937200-57946600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr15:57940200-57946800	Weak transcription	Duodenum Mucosa	Duodenum
9	chr15:57940200-57955000	Weak transcription	Gastric	stomach
10	chr15:57940400-57946600	Weak transcription	Stomach Mucosa	stomach
11	chr15:57940800-57955000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr15:57941600-57954600	Weak transcription	Pancreas	Pancrea
13	chr15:57941600-57955000	Weak transcription	Psoas Muscle	Psoas
14	chr15:57943000-57947000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr15:57943600-57947400	Weak transcription	Right Ventricle	heart
16	chr15:57943800-57947200	Weak transcription	Fetal Muscle Trunk	muscle
17	chr15:57943800-57947200	Weak transcription	Lung	lung
18	chr15:57945800-57947400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr15:57945800-57947600	Enhancers	Right Atrium	heart
20	chr15:57945800-57947800	Enhancers	Left Ventricle	heart
21	chr15:57945800-57948400	Enhancers	Fetal Intestine Large	intestine
22	chr15:57946000-57947800	Enhancers	Fetal Muscle Leg	muscle
23	chr15:57946000-57948400	Enhancers	Fetal Heart	heart
24	chr15:57946200-57947400	Enhancers	Fetal Kidney	kidney
25	chr15:57946200-57948400	Enhancers	Fetal Intestine Small	intestine
26	chr15:57946400-57946800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr15:57946400-57946800	Enhancers	Muscle Satellite Cultured Cells	--
28	chr15:57946400-57946800	Flanking Active TSS	NHDF-Ad	bronchial
29	chr15:57946400-57947000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr15:57946400-57947000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr15:57946400-57947000	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chr15:57946400-57947000	Enhancers	Small Intestine	intestine
33	chr15:57946400-57947200	Enhancers	Adipose Nuclei	Adipose
34	chr15:57946400-57947400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr15:57946400-57947400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr15:57946400-57947600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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