Variant report

Variant	rs57049976
Chromosome Location	chr3:80068432-80068433
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs17017453	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41501345	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72895475	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72895477	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72895478	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72895480	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72895481	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72895486	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72895487	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72895490	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72897318	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72897331	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7622614	1.00[AMR][1000 genomes]
rs7632598	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428088	chr3:79934080-80112721	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv590740	chr3:79999534-80575042	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv997786	chr3:80008898-80489031	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv536598	chr3:80008898-80489031	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv877030	chr3:80013063-80444843	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1014658	chr3:80035786-80716259	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv536599	chr3:80035786-80716259	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv997720	chr3:80035786-80745662	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	esv1812593	chr3:80062959-80087047	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv1805561	chr3:80062959-80091406	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv1846559	chr3:80062959-80091406	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:80066400-80068600	Enhancers	HUVEC	blood vessel

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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