Variant report

Variant	rs570504244
Chromosome Location	chr9:7048977-7048978
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892166	chr9:6602821-7222495	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv892181	chr9:6680477-7070962	Enhancers Strong transcription Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	70 gene(s)	inside rSNPs	diseases
3	nsv1023906	chr9:6731786-7372132	Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv831501	chr9:6868099-7058526	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv892185	chr9:6929053-7070962	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv870178	chr9:6941584-7060029	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv892186	chr9:6942605-7075305	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1024763	chr9:7022554-7061314	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv466117	chr9:7030268-7084558	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv613258	chr9:7030268-7084558	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv613259	chr9:7032776-7541338	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
12	nsv1015874	chr9:7048807-7434890	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
13	nsv539971	chr9:7048807-7434890	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:7009000-7055200	Weak transcription	K562	blood
2	chr9:7009000-7056400	Weak transcription	Brain Substantia Nigra	brain
3	chr9:7009000-7076600	Weak transcription	HSMM	muscle
4	chr9:7009200-7077600	Weak transcription	Osteobl	bone
5	chr9:7009800-7076600	Weak transcription	HSMMtube	muscle
6	chr9:7012200-7052600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr9:7012200-7111200	Weak transcription	Colonic Mucosa	Colon
8	chr9:7012800-7076800	Weak transcription	Pancreas	Pancrea
9	chr9:7017800-7075000	Weak transcription	HepG2	liver
10	chr9:7018600-7049600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr9:7018800-7064400	Weak transcription	Psoas Muscle	Psoas
12	chr9:7020000-7052800	Weak transcription	NHLF	lung
13	chr9:7028400-7052800	Weak transcription	Brain Hippocampus Middle	brain
14	chr9:7028400-7076800	Weak transcription	Placenta	Placenta
15	chr9:7028800-7076400	Weak transcription	Aorta	Aorta
16	chr9:7028800-7077000	Weak transcription	Esophagus	oesophagus
17	chr9:7028800-7086400	Weak transcription	Right Ventricle	heart
18	chr9:7029000-7052600	Weak transcription	Brain Anterior Caudate	brain
19	chr9:7029000-7061400	Weak transcription	Fetal Intestine Small	intestine
20	chr9:7029000-7076400	Weak transcription	Ovary	ovary
21	chr9:7029000-7076600	Weak transcription	Lung	lung
22	chr9:7029000-7077400	Weak transcription	Gastric	stomach
23	chr9:7029000-7081200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr9:7032800-7050000	Weak transcription	Primary hematopoietic stem cells	blood
25	chr9:7034000-7103600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr9:7037200-7052800	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr9:7041800-7052000	Strong transcription	Primary B cells from peripheral blood	blood
28	chr9:7042200-7056800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr9:7042800-7052400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr9:7043000-7069400	Weak transcription	NHDF-Ad	bronchial
31	chr9:7043400-7103600	Weak transcription	Rectal Smooth Muscle	rectum
32	chr9:7044400-7052800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr9:7044400-7055600	Weak transcription	Hela-S3	cervix
34	chr9:7044800-7052600	Strong transcription	Primary T cells fromperipheralblood	blood
35	chr9:7045000-7059200	Weak transcription	Fetal Muscle Trunk	muscle
36	chr9:7045200-7052800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr9:7045400-7054600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr9:7045400-7077000	Weak transcription	Fetal Muscle Leg	muscle
39	chr9:7045400-7077000	Weak transcription	HMEC	breast
40	chr9:7045600-7055400	Strong transcription	Primary T helper cells fromperipheralblood	blood
41	chr9:7045800-7052800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr9:7046000-7052400	Weak transcription	Stomach Mucosa	stomach
43	chr9:7046000-7053400	Strong transcription	Primary B cells from cord blood	blood
44	chr9:7046200-7052000	Strong transcription	Primary monocytes fromperipheralblood	blood
45	chr9:7046200-7052800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr9:7046200-7053600	Strong transcription	Primary T cells from cord blood	blood
47	chr9:7046400-7049200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr9:7046400-7050200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr9:7046400-7052000	Strong transcription	Adipose Nuclei	Adipose
50	chr9:7046400-7052000	Strong transcription	Thymus	Thymus

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