Variant report

Variant	rs570533346
Chromosome Location	chr3:134368677-134368678
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877510	chr3:134126150-134400448	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv877512	chr3:134174071-134372486	Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv877513	chr3:134174071-134379752	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv877514	chr3:134191938-134372486	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	esv3343656	chr3:134368312-134371210	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134361600-134369600	Weak transcription	Pancreas	Pancrea
2	chr3:134362200-134368800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr3:134363400-134369200	Weak transcription	Adipose Nuclei	Adipose
4	chr3:134363800-134369400	Weak transcription	Ovary	ovary
5	chr3:134364400-134369000	Weak transcription	Colon Smooth Muscle	Colon
6	chr3:134364400-134369000	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr3:134364400-134369200	Weak transcription	Brain Cingulate Gyrus	brain
8	chr3:134364400-134369200	Weak transcription	Spleen	Spleen
9	chr3:134364400-134369400	Weak transcription	HSMMtube	muscle
10	chr3:134365000-134369400	Weak transcription	Right Atrium	heart
11	chr3:134367000-134369000	Enhancers	Psoas Muscle	Psoas
12	chr3:134367000-134369800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
13	chr3:134367800-134369200	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr3:134368200-134371200	Flanking Active TSS	Stomach Smooth Muscle	stomach
15	chr3:134368400-134369000	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
16	chr3:134368400-134369000	Enhancers	Left Ventricle	heart
17	chr3:134368400-134371800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
18	chr3:134368600-134368800	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr3:134368600-134368800	Flanking Active TSS	Brain Angular Gyrus	brain
20	chr3:134368600-134368800	Enhancers	Brain Anterior Caudate	brain
21	chr3:134368600-134368800	Enhancers	Brain Hippocampus Middle	brain
22	chr3:134368600-134368800	Enhancers	Brain Inferior Temporal Lobe	brain
23	chr3:134368600-134368800	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
24	chr3:134368600-134368800	Flanking Active TSS	Brain Substantia Nigra	brain
25	chr3:134368600-134368800	Active TSS	Osteobl	bone
26	chr3:134368600-134369000	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
27	chr3:134368600-134369200	Enhancers	Right Ventricle	heart
28	chr3:134368600-134369400	Flanking Active TSS	Fetal Heart	heart
29	chr3:134368600-134369600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
30	chr3:134368600-134370200	Active TSS	Rectal Smooth Muscle	rectum

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