Variant report

Variant	rs570603
Chromosome Location	chr13:30565900-30565901
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs624506	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3520592	chr13:30243601-30648554	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv3520593	chr13:30243601-30648554	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30565000-30566400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr13:30565000-30566400	Enhancers	HSMMtube	muscle
3	chr13:30565000-30566600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr13:30565000-30566800	Enhancers	NH-A	brain
5	chr13:30565000-30566800	Enhancers	Osteobl	bone
6	chr13:30565000-30569000	Enhancers	NHDF-Ad	bronchial
7	chr13:30565000-30569400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr13:30565200-30566000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr13:30565200-30566400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr13:30565200-30566400	Enhancers	NHEK	skin
11	chr13:30565200-30566600	Enhancers	HMEC	breast
12	chr13:30565200-30566800	Enhancers	HSMM	muscle
13	chr13:30565200-30566800	Enhancers	NHLF	lung
14	chr13:30565200-30568600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr13:30565200-30569400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr13:30565400-30566400	Enhancers	Muscle Satellite Cultured Cells	--
17	chr13:30565400-30569600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr13:30565600-30566000	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr13:30565800-30567000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr13:30565800-30567000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr13:30565800-30567000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr13:30565800-30573000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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