Variant report

Variant	rs570622100
Chromosome Location	chr4:95499290-95499291
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr4:95499289-95499858	IMR90	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:95372974..95374639-chr4:95498211..95500101,2	K562	blood:
2	chr4:95498533..95501686-chr4:95504980..95507488,3	K562	blood:

Variant related genes	Relation type
PDLIM5	TF binding region
ENSG00000163110	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2492606	chr4:95498006-95499606	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3409183	chr4:95498279-95500302	Weak transcription Enhancers Genic enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv6075	chr4:95498753-95499543	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2304226	chr4:95498779-95499490	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3465739	chr4:95498845-95499379	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv3526845	chr4:95498869-95499395	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3526846	chr4:95498880-95499390	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv3526848	chr4:95498891-95499317	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv3465738	chr4:95498904-95499351	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	esv3526850	chr4:95498908-95499332	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	esv3465740	chr4:95498914-95499306	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	esv3526847	chr4:95498920-95499330	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	esv4831	chr4:95498925-95499393	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	esv3361398	chr4:95498928-95499302	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	esv3465743	chr4:95498965-95499291	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	esv3526851	chr4:95498965-95499291	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	esv1135092	chr4:95498974-95499290	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95483400-95524400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr4:95484000-95507400	Weak transcription	Hela-S3	cervix
3	chr4:95489000-95507400	Weak transcription	Primary B cells from peripheral blood	blood
4	chr4:95489200-95506800	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr4:95489200-95507400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr4:95489200-95509800	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr4:95489400-95506200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr4:95489600-95508200	Weak transcription	GM12878-XiMat	blood
9	chr4:95489600-95522800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr4:95489600-95539200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr4:95492000-95502200	Weak transcription	Fetal Intestine Small	intestine
12	chr4:95493200-95540200	Weak transcription	Small Intestine	intestine
13	chr4:95493200-95584800	Weak transcription	Primary B cells from cord blood	blood
14	chr4:95494000-95506200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr4:95495200-95506800	Weak transcription	Fetal Stomach	stomach
16	chr4:95496000-95501800	Weak transcription	Fetal Lung	lung
17	chr4:95496800-95499800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr4:95497000-95499800	Enhancers	Colon Smooth Muscle	Colon
19	chr4:95497200-95500200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr4:95497200-95500600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr4:95497200-95506400	Weak transcription	Left Ventricle	heart
22	chr4:95497200-95506800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr4:95497200-95506800	Weak transcription	Psoas Muscle	Psoas
24	chr4:95497200-95507400	Weak transcription	Primary T cells from cord blood	blood
25	chr4:95497200-95511000	Weak transcription	Ovary	ovary
26	chr4:95497200-95512600	Weak transcription	Aorta	Aorta
27	chr4:95497200-95512600	Weak transcription	Pancreas	Pancrea
28	chr4:95497200-95513800	Weak transcription	Right Ventricle	heart
29	chr4:95497200-95516200	Weak transcription	Right Atrium	heart
30	chr4:95497200-95520000	Weak transcription	Spleen	Spleen
31	chr4:95497200-95524600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr4:95497200-95524600	Weak transcription	Gastric	stomach
33	chr4:95497200-95524600	Weak transcription	Lung	lung
34	chr4:95497200-95526000	Weak transcription	Brain Angular Gyrus	brain
35	chr4:95497200-95553000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr4:95497200-95569400	Weak transcription	Esophagus	oesophagus
37	chr4:95497400-95499400	Weak transcription	Brain Cingulate Gyrus	brain
38	chr4:95497400-95499600	Enhancers	HUES64 Cell Line	embryonic stem cell
39	chr4:95497400-95502400	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr4:95497400-95505000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr4:95497400-95505000	Weak transcription	Brain Substantia Nigra	brain
42	chr4:95497400-95506000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr4:95497400-95506800	Weak transcription	Primary neutrophils fromperipheralblood	blood
44	chr4:95497400-95506800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr4:95497400-95506800	Weak transcription	Adipose Nuclei	Adipose
46	chr4:95497400-95507600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr4:95497400-95510200	Weak transcription	Fetal Kidney	kidney
48	chr4:95497400-95513600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
49	chr4:95497400-95515000	Weak transcription	Colonic Mucosa	Colon
50	chr4:95497400-95524200	Weak transcription	NHLF	lung

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