Variant report

Variant	rs57064503
Chromosome Location	chr5:75662612-75662613
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs6859353	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6859902	0.95[ASN][1000 genomes]
rs6860083	0.95[ASN][1000 genomes]
rs6860113	0.95[ASN][1000 genomes]
rs6860973	0.95[ASN][1000 genomes]
rs6870948	0.86[ASN][1000 genomes]
rs6872965	0.95[ASN][1000 genomes]
rs6881881	0.95[ASN][1000 genomes]
rs6882055	0.95[ASN][1000 genomes]
rs6886369	0.95[ASN][1000 genomes]
rs6890217	0.91[ASN][1000 genomes]
rs6893486	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7704494	0.95[ASN][1000 genomes]
rs7704498	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027368	chr5:74759999-75663712	Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv870415	chr5:75526088-75738412	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:75660000-75663600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr5:75660200-75663600	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr5:75660200-75663600	Weak transcription	NHEK	skin
4	chr5:75660200-75667800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:75660200-75667800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr5:75660200-75668000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr5:75660400-75666200	Enhancers	K562	blood
8	chr5:75660400-75667800	Weak transcription	HepG2	liver
9	chr5:75660400-75668000	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr5:75661800-75664600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr5:75661800-75664600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr5:75662000-75663600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr5:75662000-75663600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr5:75662000-75664800	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr5:75662400-75663600	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr5:75662600-75663000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
17	chr5:75662600-75664000	Weak transcription	Monocytes-CD14+_RO01746	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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