Variant report

Variant	rs57067759
Chromosome Location	chr3:49852613-49852614
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs56246233	1.00[AFR][1000 genomes]
rs58588000	1.00[AFR][1000 genomes]
rs6776029	1.00[AFR][1000 genomes]
rs6807837	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1796352	chr3:49687101-49949959	Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv834688	chr3:49811115-50019299	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	esv1809827	chr3:49812331-49934179	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
4	nsv876766	chr3:49817450-49961780	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
5	nsv967270	chr3:49845381-49870409	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:49843400-49866400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr3:49851800-49852800	Enhancers	Primary T killer memory cells from peripheral blood	blood
3	chr3:49851800-49853000	Enhancers	Primary T cells fromperipheralblood	blood
4	chr3:49851800-49853800	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr3:49851800-49866000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr3:49852000-49853200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr3:49852000-49853200	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr3:49852000-49853400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr3:49852000-49853600	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr3:49852000-49854400	Weak transcription	Fetal Lung	lung
11	chr3:49852000-49864800	Weak transcription	Fetal Thymus	thymus
12	chr3:49852000-49865200	Weak transcription	Fetal Intestine Small	intestine
13	chr3:49852000-49866200	Weak transcription	Thymus	Thymus
14	chr3:49852400-49853800	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr3:49852400-49866000	Weak transcription	GM12878-XiMat	blood
16	chr3:49852600-49853000	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr3:49852600-49855000	Weak transcription	Primary B cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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